1 HAMP#1
165-234 aa · 70 aa · 14.9% of protein
Raw token
HAMP:165:0.00000000000042:234:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G605_RS0116565
Histidine kinase, Classic
Clostridium cadaveris AGR2141 · GCF_000424205
ClassHKTypeClassicLength470 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000424205#G605_RS0116565Stable P2CS identifier used across views.
GenomeGCF_000424205Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length470 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 470 aa (51.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa470 aa
Domain-by-domain annotation3 items
2 HisKA#2
245-310 aa · 66 aa · 14.0% of protein
Raw token
HisKA:245:1.24e-16:310:66:643 HATPase_c#3
358-465 aa · 108 aa · 23.0% of protein
Raw token
HATPase_c:358:9.46e-31:465:108:109- Raw architecture: HAMP:165:0.00000000000042:234:70:69#HisKA:245:1.24e-16:310:66:64#HATPase_c:358:9.46e-31:465:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000424205::NZ_KE384149.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9669-11766Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000424205::NZ_KE384149.1::G00022Context members
G605_RS0116565G605_RS0116570
Partner locus tags
G605_RS0116565G605_RS0116570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_051196383.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG605_RS0116565Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_KE384149.1Sequence record reported by the local genomic context database.
Genomic interval9 669-11 081 nt1 413 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span9 669-11 766 ntGCF_000424205::NZ_KE384149.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000424205::NZ_KE384149.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE384149.1All displayed genes belong to this local TCS context.
Neighborhood span9 669-11 766 nt2 098 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 669 nt11 766 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G605_RS0116565GCF_000424205#G605_RS0116565
HKClassicCurrent focus
9 669-11 081 nt · Reverse (-)
G605_RS0116570GCF_000424205#G605_RS0116570
RROmpR
11 083-11 766 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424205#G605_RS0116565The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1717468
Simplified PFAM architecture for HKOC_1717468
PFAM domain coverage: 225 / 470 aa (47.9%)
1 aa470 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[184-234] | HisKA[246-310] | HATPase_c[358-466]
- Domain count: 3
- Matched identifier: HKOC_1717468
- Positioned domains: HAMP 184-234 ; HisKA 246-310 ; HATPase_c 358-466
Cluster members and taxonomy
Representative gene: GCF_000424205#G605_RS0116565
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 692 · GCF_000424205
AssemblyASM42420v1 · Scaffoldhaploid
Genome composition3 542 160 bp · 31,0% GCClostridium cadaveris AGR2141
Signal transduction countsGenes 80 · HK 39 · RR 40CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key