1 Response_reg#1
5-108 aa · 104 aa · 52.5% of protein
Raw token
Response_reg:5:2.09e-28:108:104:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G605_RS0116145
Response regulator, AmiR_NasR family
Clostridium cadaveris AGR2141 · GCF_000424205
ClassRRTypeAmiR_NasRLength198 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000424205#G605_RS0116145Stable P2CS identifier used across views.
GenomeGCF_000424205Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regANTAR
Protein length198 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 198 aa (77.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 ANTARSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa198 aa
Domain-by-domain annotation2 items
2 ANTAR#2
138-186 aa · 49 aa · 24.7% of protein
Raw token
ANTAR:138:4.8e-18:186:49:49- Raw architecture: Response_reg:5:2.09e-28:108:104:111#ANTAR:138:4.8e-18:186:49:49
- Domain description: 1 Response_reg,1 ANTAR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000424205::NZ_KE384148.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span231946-233938Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000424205::NZ_KE384148.1::G00007Context members
G605_RS0116140G605_RS0116145
Partner locus tags
G605_RS0116140G605_RS0116145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027640072.1Primary protein accession used for annex mappings.
UniProt accessionA0A1I2JW68Primary UniProt accession resolved in the annex database.
UniProt IDA0A1I2JW68_9CLOTDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG605_RS0116145Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_KE384148.1Sequence record reported by the local genomic context database.
Genomic interval233 342-233 938 nt597 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span231 946-233 938 ntGCF_000424205::NZ_KE384148.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000424205::NZ_KE384148.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE384148.1All displayed genes belong to this local TCS context.
Neighborhood span231 946-233 938 nt1 993 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
231 946 nt233 938 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G605_RS0116140GCF_000424205#G605_RS0116140
HKClassic
231 946-233 361 nt · Reverse (-)
G605_RS0116145GCF_000424205#G605_RS0116145
RRAmiR_NasRCurrent focus
233 342-233 938 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424205#G605_RS0116145The current gene is the representative for this cluster.
PFAM architectureResponse_reg + ANTAR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2149017
Simplified PFAM architecture for RROC_2149017
PFAM domain coverage: 160 / 198 aa (80.8%)
1 aa198 aa
Response_regANTAR
- Simplified architecture: Response_reg + ANTAR
- Raw architecture: Response_reg[5-112] | ANTAR[135-186]
- Domain count: 2
- Matched identifier: RROC_2149017
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; ANTAR 135-186 ; ANTAR 135-186
Cluster members and taxonomy
Representative gene: GCF_000424205#G605_RS0116145
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 692 · GCF_000424205
AssemblyASM42420v1 · Scaffoldhaploid
Genome composition3 542 160 bp · 31,0% GCClostridium cadaveris AGR2141
Signal transduction countsGenes 80 · HK 39 · RR 40CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key