1 HisKA#1
514-576 aa · 63 aa · 8.5% of protein
Raw token
HisKA:514:0.0000000000000147:576:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G605_RS0114620
Histidine kinase, Classic
Clostridium cadaveris AGR2141 · GCF_000424205
ClassHKTypeClassicLength740 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000424205#G605_RS0114620Stable P2CS identifier used across views.
GenomeGCF_000424205Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length740 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 740 aa (20.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa740 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
632-718 aa · 87 aa · 11.8% of protein
Raw token
HATPase_c:632:0.000000000068:718:91:109- Raw architecture: HisKA:514:0.0000000000000147:576:63:64#HATPase_c:632:0.000000000068:718:91:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000424205::NZ_AUJL01000038.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3205-6100Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000424205::NZ_AUJL01000038.1::G00043Context members
G605_RS0114615G605_RS0114620
Partner locus tags
G605_RS0114615G605_RS0114620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027639816.1Primary protein accession used for annex mappings.
UniProt accessionA0A1I2QGJ6Primary UniProt accession resolved in the annex database.
UniProt IDA0A1I2QGJ6_9CLOTDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG605_RS0114620Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AUJL01000038.1Sequence record reported by the local genomic context database.
Genomic interval3 878-6 100 nt2 223 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 205-6 100 ntGCF_000424205::NZ_AUJL01000038.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000424205::NZ_AUJL01000038.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AUJL01000038.1All displayed genes belong to this local TCS context.
Neighborhood span3 205-6 100 nt2 896 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 205 nt6 100 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G605_RS0114615GCF_000424205#G605_RS0114615
RROmpR
3 205-3 903 nt · Forward (+)
G605_RS0114620GCF_000424205#G605_RS0114620
HKClassicCurrent focus
3 878-6 100 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424205#G605_RS0114620The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0691782
Simplified PFAM architecture for HKOC_0691782
PFAM domain coverage: 167 / 740 aa (22.6%)
1 aa740 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[514-576] | HATPase_c[627-730]
- Domain count: 2
- Matched identifier: HKOC_0691782
- Positioned domains: HisKA 514-576 ; HATPase_c 627-730
Cluster members and taxonomy
Representative gene: GCF_000424205#G605_RS0114620
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 692 · GCF_000424205
AssemblyASM42420v1 · Scaffoldhaploid
Genome composition3 542 160 bp · 31,0% GCClostridium cadaveris AGR2141
Signal transduction countsGenes 80 · HK 39 · RR 40CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key