1 HisKA#1
843-906 aa · 64 aa · 6.0% of protein
Raw token
HisKA:843:0.00000000000186:906:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G605_RS0113530
Histidine kinase, Classic
Clostridium cadaveris AGR2141 · GCF_000424205
ClassHKTypeClassicLength1063 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000424205#G605_RS0113530Stable P2CS identifier used across views.
GenomeGCF_000424205Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length1063 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 1063 aa (16.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1063 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
953-1061 aa · 109 aa · 10.3% of protein
Raw token
HATPase_c:953:2.72e-29:1061:109:109- Raw architecture: HisKA:843:0.00000000000186:906:64:64#HATPase_c:953:2.72e-29:1061:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000424205::NZ_AUJL01000031.1::G00041
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span478-3669Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000424205::NZ_AUJL01000031.1::G00041Context members
G605_RS0113530
Partner locus tags
G605_RS0113530
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_027639636.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG605_RS0113530Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AUJL01000031.1Sequence record reported by the local genomic context database.
Genomic interval478-3 669 nt3 192 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span478-3 669 ntGCF_000424205::NZ_AUJL01000031.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000424205::NZ_AUJL01000031.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AUJL01000031.1All displayed genes belong to this local TCS context.
Neighborhood span478-3 669 nt3 192 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
478 nt3 669 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G605_RS0113530GCF_000424205#G605_RS0113530
HKClassicCurrent focus
478-3 669 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_032550875#E6X21_RS12110Use this link to inspect the representative gene detail.
PFAM architectureReg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c11 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0247368
Simplified PFAM architecture for HKOC_0247368
PFAM domain coverage: 416 / 1069 aa (38.9%)
1 aa1069 aa
Reg_propReg_propReg_propReg_propReg_propReg_propReg_propReg_propY_Y_YHisKAHATPase_c
- Simplified architecture: Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c
- Raw architecture: Reg_prop[49-72] | Reg_prop[95-116] | Reg_prop[184-206] | Reg_prop[230-250] | Reg_prop[279-300] | Reg_prop[324-347] | Reg_prop[371-392] | Reg_prop[554-576] | Y_Y_Y[719-779] | HisKA[849-912] | HATPase_c[959-1068]
- Domain count: 11
- Matched identifier: HKOC_0247368
- Positioned domains: Reg_prop 49-72 ; Reg_prop 95-116 ; Reg_prop 184-206 ; Reg_prop 230-250 ; Reg_prop 279-300 ; Reg_prop 324-347 ; Reg_prop 371-392 ; Reg_prop 554-576 ; Y_Y_Y 719-779 ; HisKA 849-912 ; HATPase_c 959-1068
Cluster members and taxonomy
Representative gene: GCF_032550875#E6X21_RS12110
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 692 · GCF_000424205
AssemblyASM42420v1 · Scaffoldhaploid
Genome composition3 542 160 bp · 31,0% GCClostridium cadaveris AGR2141
Signal transduction countsGenes 80 · HK 39 · RR 40CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key