1 PAS_3#1
31-116 aa · 86 aa · 10.5% of protein
Raw token
PAS_3:31:0.0000000685:116:87:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G605_RS0112525
Histidine kinase, Hybrid
Clostridium cadaveris AGR2141 · GCF_000424205
ClassHKTypeHybridLength820 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_000424205#G605_RS0112525Stable P2CS identifier used across views.
GenomeGCF_000424205Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length820 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage389 / 820 aa (47.4%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa820 aa
Domain-by-domain annotation4 items
2 HisKA#2
435-501 aa · 67 aa · 8.2% of protein
Raw token
HisKA:435:0.00000000000000911:501:67:643 HATPase_c#3
548-665 aa · 118 aa · 14.4% of protein
Raw token
HATPase_c:548:5.43e-32:665:118:1094 Response_reg#4
699-816 aa · 118 aa · 14.4% of protein
Raw token
Response_reg:699:5.75e-27:816:118:111- Raw architecture: PAS_3:31:0.0000000685:116:87:89#HisKA:435:0.00000000000000911:501:67:64#HATPase_c:548:5.43e-32:665:118:109#Response_reg:699:5.75e-27:816:118:111
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_000424205::NZ_AUJL01000027.1::G00039
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span1551-7085Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000424205::NZ_AUJL01000027.1::G00039Context members
G605_RS0112515G605_RS0112520G605_RS0112525
Partner locus tags
G605_RS0112515G605_RS0112520G605_RS0112525
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_027639470.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG605_RS0112525Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AUJL01000027.1Sequence record reported by the local genomic context database.
Genomic interval4 623-7 085 nt2 463 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 551-7 085 ntGCF_000424205::NZ_AUJL01000027.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000424205::NZ_AUJL01000027.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AUJL01000027.1All displayed genes belong to this local TCS context.
Neighborhood span1 551-7 085 nt5 535 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 551 nt7 085 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
G605_RS0112515GCF_000424205#G605_RS0112515
RRPleD_VieA
1 551-3 338 nt · Forward (+)
G605_RS0112520GCF_000424205#G605_RS0112520
RRPleD
3 307-4 578 nt · Forward (+)
G605_RS0112525GCF_000424205#G605_RS0112525
HKHybridCurrent focus
4 623-7 085 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424205#G605_RS0112525The current gene is the representative for this cluster.
PFAM architecturePAS_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0529696
Simplified PFAM architecture for HKOC_0529696
PFAM domain coverage: 383 / 820 aa (46.7%)
1 aa820 aa
PAS_3HisKAHATPase_cResponse_reg
- Simplified architecture: PAS_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: PAS_3[32-115] | HisKA[435-501] | HATPase_c[548-663] | Response_reg[699-814]
- Domain count: 4
- Matched identifier: HKOC_0529696
- Positioned domains: PAS_3 32-115 ; HisKA 435-501 ; HATPase_c 548-663 ; Response_reg 699-814
Cluster members and taxonomy
Representative gene: GCF_000424205#G605_RS0112525
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 692 · GCF_000424205
AssemblyASM42420v1 · Scaffoldhaploid
Genome composition3 542 160 bp · 31,0% GCClostridium cadaveris AGR2141
Signal transduction countsGenes 80 · HK 39 · RR 40CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key