1 Response_reg#1
29-142 aa · 114 aa · 19.2% of protein
Raw token
Response_reg:29:1.6e-24:142:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G605_RS0112515
Response regulator, PleD_VieA family
Clostridium cadaveris AGR2141 · GCF_000424205
ClassRRTypePleD_VieALength595 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_000424205#G605_RS0112515Stable P2CS identifier used across views.
GenomeGCF_000424205Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regGGDEFEAL
Protein length595 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage492 / 595 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 GGDEF,1 EALSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa595 aa
Domain-by-domain annotation3 items
2 GGDEF#2
162-303 aa · 142 aa · 23.9% of protein
Raw token
GGDEF:162:0.0000000000000109:303:156:1603 EAL#3
331-566 aa · 236 aa · 39.7% of protein
Raw token
EAL:331:6.47e-79:566:236:235- Raw architecture: Response_reg:29:1.6e-24:142:115:111#GGDEF:162:0.0000000000000109:303:156:160#EAL:331:6.47e-79:566:236:235
- Domain description: 1 Response_reg,1 GGDEF,1 EAL
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_000424205::NZ_AUJL01000027.1::G00039
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span1551-7085Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000424205::NZ_AUJL01000027.1::G00039Context members
G605_RS0112515G605_RS0112520G605_RS0112525
Partner locus tags
G605_RS0112515G605_RS0112520G605_RS0112525
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242831518.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG605_RS0112515Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AUJL01000027.1Sequence record reported by the local genomic context database.
Genomic interval1 551-3 338 nt1 788 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 551-7 085 ntGCF_000424205::NZ_AUJL01000027.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000424205::NZ_AUJL01000027.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AUJL01000027.1All displayed genes belong to this local TCS context.
Neighborhood span1 551-7 085 nt5 535 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 551 nt7 085 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
G605_RS0112515GCF_000424205#G605_RS0112515
RRPleD_VieACurrent focus
1 551-3 338 nt · Forward (+)
G605_RS0112520GCF_000424205#G605_RS0112520
RRPleD
3 307-4 578 nt · Forward (+)
G605_RS0112525GCF_000424205#G605_RS0112525
HKHybrid
4 623-7 085 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424205#G605_RS0112515The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF + EAL3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0044767
Simplified PFAM architecture for RROC_0044767
PFAM domain coverage: 489 / 595 aa (82.2%)
1 aa595 aa
Response_regGGDEFEAL
- Simplified architecture: Response_reg + GGDEF + EAL
- Raw architecture: Response_reg[29-137] | GGDEF[162-306] | EAL[332-566]
- Domain count: 3
- Matched identifier: RROC_0044767
- Positioned domains: Response_reg 29-137 ; Response_reg 29-137 ; GGDEF 162-306 ; GGDEF 162-306 ; EAL 332-566 ; EAL 332-566
Cluster members and taxonomy
Representative gene: GCF_000424205#G605_RS0112515
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 692 · GCF_000424205
AssemblyASM42420v1 · Scaffoldhaploid
Genome composition3 542 160 bp · 31,0% GCClostridium cadaveris AGR2141
Signal transduction countsGenes 80 · HK 39 · RR 40CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key