1 Response_reg#1
5-115 aa · 111 aa · 39.1% of protein
Raw token
Response_reg:5:2.71e-19:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G605_RS0110770
Response regulator, unclassified
Clostridium cadaveris AGR2141 · GCF_000424205
ClassRRTypeunclassifiedLength284 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000424205#G605_RS0110770Stable P2CS identifier used across views.
GenomeGCF_000424205Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regYcbB
Protein length284 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage231 / 284 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 YcbBSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa284 aa
Domain-by-domain annotation2 items
2 YcbB#2
159-278 aa · 120 aa · 42.3% of protein
Raw token
YcbB:159:3.73e-45:278:131:131- Raw architecture: Response_reg:5:2.71e-19:115:111:111#YcbB:159:3.73e-45:278:131:131
- Domain description: 1 Response_reg,1 YcbB
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000424205::NZ_AUJL01000021.1::G00038
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span26823-27677Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000424205::NZ_AUJL01000021.1::G00038Context members
G605_RS0110770
Partner locus tags
G605_RS0110770
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027639195.1Primary protein accession used for annex mappings.
UniProt accessionA0A1I2N376Primary UniProt accession resolved in the annex database.
UniProt IDA0A1I2N376_9CLOTDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG605_RS0110770Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AUJL01000021.1Sequence record reported by the local genomic context database.
Genomic interval26 823-27 677 nt855 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span26 823-27 677 ntGCF_000424205::NZ_AUJL01000021.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000424205::NZ_AUJL01000021.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AUJL01000021.1All displayed genes belong to this local TCS context.
Neighborhood span26 823-27 677 nt855 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 823 nt27 677 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G605_RS0110770GCF_000424205#G605_RS0110770
RRunclassifiedCurrent focus
26 823-27 677 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424205#G605_RS0110770The current gene is the representative for this cluster.
PFAM architectureResponse_reg + YcbB2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0592200
Simplified PFAM architecture for RROC_0592200
PFAM domain coverage: 228 / 284 aa (80.3%)
1 aa284 aa
Response_regYcbB
- Simplified architecture: Response_reg + YcbB
- Raw architecture: Response_reg[5-113] | YcbB[160-278]
- Domain count: 2
- Matched identifier: RROC_0592200
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; YcbB 160-278 ; YcbB 160-278
Cluster members and taxonomy
Representative gene: GCF_000424205#G605_RS0110770
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 692 · GCF_000424205
AssemblyASM42420v1 · Scaffoldhaploid
Genome composition3 542 160 bp · 31,0% GCClostridium cadaveris AGR2141
Signal transduction countsGenes 80 · HK 39 · RR 40CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key