1 Response_reg#1
4-116 aa · 113 aa · 50.0% of protein
Raw token
Response_reg:4:1.56e-27:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G605_RS0110315
Response regulator, unclassified
Clostridium cadaveris AGR2141 · GCF_000424205
ClassRRTypeunclassifiedLength226 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000424205#G605_RS0110315Stable P2CS identifier used across views.
GenomeGCF_000424205Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_11
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage156 / 226 aa (69.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_11Summary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 HTH_11#2
169-211 aa · 43 aa · 19.0% of protein
Raw token
HTH_11:169:0.0000838:211:43:52- Raw architecture: Response_reg:4:1.56e-27:116:113:111#HTH_11:169:0.0000838:211:43:52
- Domain description: 1 Response_reg,1 HTH_11
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000424205::NZ_AUJL01000020.1::G00036
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span4005-4685Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000424205::NZ_AUJL01000020.1::G00036Context members
G605_RS0110315
Partner locus tags
G605_RS0110315
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027639118.1Primary protein accession used for annex mappings.
UniProt accessionA0A1I2MZM9Primary UniProt accession resolved in the annex database.
UniProt IDA0A1I2MZM9_9CLOTDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG605_RS0110315Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AUJL01000020.1Sequence record reported by the local genomic context database.
Genomic interval4 005-4 685 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 005-4 685 ntGCF_000424205::NZ_AUJL01000020.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000424205::NZ_AUJL01000020.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AUJL01000020.1All displayed genes belong to this local TCS context.
Neighborhood span4 005-4 685 nt681 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 005 nt4 685 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G605_RS0110315GCF_000424205#G605_RS0110315
RRunclassifiedCurrent focus
4 005-4 685 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424205#G605_RS0110315The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_112 domains in the representative PFAM annotation.
PFAM architecture for RROC_1410745
Simplified PFAM architecture for RROC_1410745
PFAM domain coverage: 165 / 226 aa (73.0%)
1 aa226 aa
Response_regHTH_11
- Simplified architecture: Response_reg + HTH_11
- Raw architecture: Response_reg[4-116] | HTH_11[161-212]
- Domain count: 2
- Matched identifier: RROC_1410745
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_11 161-212 ; HTH_11 161-212
Cluster members and taxonomy
Representative gene: GCF_000424205#G605_RS0110315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 692 · GCF_000424205
AssemblyASM42420v1 · Scaffoldhaploid
Genome composition3 542 160 bp · 31,0% GCClostridium cadaveris AGR2141
Signal transduction countsGenes 80 · HK 39 · RR 40CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key