1 HAMP#1
185-254 aa · 70 aa · 11.5% of protein
Raw token
HAMP:185:0.000000000599:254:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G605_RS0110025
Histidine kinase, Classic
Clostridium cadaveris AGR2141 · GCF_000424205
ClassHKTypeClassicLength611 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000424205#G605_RS0110025Stable P2CS identifier used across views.
GenomeGCF_000424205Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPPAS_9HisKAHATPase_c
Protein length611 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage350 / 611 aa (57.3%)Merged over positioned domains only.
Domain description1 HAMP,1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa611 aa
Domain-by-domain annotation4 items
2 PAS_9#2
279-377 aa · 99 aa · 16.2% of protein
Raw token
PAS_9:279:0.00000000317:377:101:1023 HisKA#3
384-452 aa · 69 aa · 11.3% of protein
Raw token
HisKA:384:0.0000000000000873:452:69:644 HATPase_c#4
498-609 aa · 112 aa · 18.3% of protein
Raw token
HATPase_c:498:6.58e-29:609:112:109- Raw architecture: HAMP:185:0.000000000599:254:70:69#PAS_9:279:0.00000000317:377:101:102#HisKA:384:0.0000000000000873:452:69:64#HATPase_c:498:6.58e-29:609:112:109
- Domain description: 1 HAMP,1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000424205::NZ_AUJL01000019.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span15267-17674Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000424205::NZ_AUJL01000019.1::G00035Context members
G605_RS0110020G605_RS0110025
Partner locus tags
G605_RS0110020G605_RS0110025
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027639069.1Primary protein accession used for annex mappings.
UniProt accessionA0A1I2N6C2Primary UniProt accession resolved in the annex database.
UniProt IDA0A1I2N6C2_9CLOTDisplay identifier provided by UniProt.
GO / PubMed7 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG605_RS0110025Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AUJL01000019.1Sequence record reported by the local genomic context database.
Genomic interval15 839-17 674 nt1 836 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span15 267-17 674 ntGCF_000424205::NZ_AUJL01000019.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000424205::NZ_AUJL01000019.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AUJL01000019.1All displayed genes belong to this local TCS context.
Neighborhood span15 267-17 674 nt2 408 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 267 nt17 674 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G605_RS0110020GCF_000424205#G605_RS0110020
RRunclassified
15 267-15 839 nt · Reverse (-)
G605_RS0110025GCF_000424205#G605_RS0110025
HKClassicCurrent focus
15 839-17 674 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424205#G605_RS0110025The current gene is the representative for this cluster.
PFAM architectureHAMP + PAS + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1000857
Simplified PFAM architecture for HKOC_1000857
PFAM domain coverage: 334 / 611 aa (54.7%)
1 aa611 aa
HAMPPASHisKAHATPase_c
- Simplified architecture: HAMP + PAS + HisKA + HATPase_c
- Raw architecture: HAMP[203-253] | PAS[272-375] | HisKA[384-451] | HATPase_c[498-608]
- Domain count: 4
- Matched identifier: HKOC_1000857
- Positioned domains: HAMP 203-253 ; PAS 272-375 ; HisKA 384-451 ; HATPase_c 498-608
Cluster members and taxonomy
Representative gene: GCF_000424205#G605_RS0110025
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 692 · GCF_000424205
AssemblyASM42420v1 · Scaffoldhaploid
Genome composition3 542 160 bp · 31,0% GCClostridium cadaveris AGR2141
Signal transduction countsGenes 80 · HK 39 · RR 40CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key