1 Response_reg#1
5-109 aa · 105 aa · 55.3% of protein
Raw token
Response_reg:5:3.09e-35:109:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G605_RS0110020
Response regulator, unclassified
Clostridium cadaveris AGR2141 · GCF_000424205
ClassRRTypeunclassifiedLength190 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000424205#G605_RS0110020Stable P2CS identifier used across views.
GenomeGCF_000424205Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length190 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage105 / 190 aa (55.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa190 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:3.09e-35:109:105:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000424205::NZ_AUJL01000019.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span15267-17674Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000424205::NZ_AUJL01000019.1::G00035Context members
G605_RS0110020G605_RS0110025
Partner locus tags
G605_RS0110020G605_RS0110025
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_027639068.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG605_RS0110020Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AUJL01000019.1Sequence record reported by the local genomic context database.
Genomic interval15 267-15 839 nt573 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span15 267-17 674 ntGCF_000424205::NZ_AUJL01000019.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000424205::NZ_AUJL01000019.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AUJL01000019.1All displayed genes belong to this local TCS context.
Neighborhood span15 267-17 674 nt2 408 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 267 nt17 674 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G605_RS0110020GCF_000424205#G605_RS0110020
RRunclassifiedCurrent focus
15 267-15 839 nt · Reverse (-)
G605_RS0110025GCF_000424205#G605_RS0110025
HKClassic
15 839-17 674 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424205#G605_RS0110020The current gene is the representative for this cluster.
PFAM architectureResponse_reg + TPR_192 domains in the representative PFAM annotation.
PFAM architecture for RROC_2170403
Simplified PFAM architecture for RROC_2170403
PFAM domain coverage: 149 / 190 aa (78.4%)
1 aa190 aa
Response_regTPR_19
- Simplified architecture: Response_reg + TPR_19
- Raw architecture: Response_reg[5-113] | TPR_19[136-175]
- Domain count: 2
- Matched identifier: RROC_2170403
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; TPR_19 136-175 ; TPR_19 136-175
Cluster members and taxonomy
Representative gene: GCF_000424205#G605_RS0110020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 692 · GCF_000424205
AssemblyASM42420v1 · Scaffoldhaploid
Genome composition3 542 160 bp · 31,0% GCClostridium cadaveris AGR2141
Signal transduction countsGenes 80 · HK 39 · RR 40CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key