1 Response_reg#1
3-103 aa · 101 aa · 48.8% of protein
Raw token
Response_reg:3:2.21e-29:103:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G605_RS0109095
Response regulator NarL family
Clostridium cadaveris AGR2141 · GCF_000424205
ClassRRTypeNarLLength207 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000424205#G605_RS0109095Stable P2CS identifier used across views.
GenomeGCF_000424205Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length207 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 207 aa (74.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa207 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
149-201 aa · 53 aa · 25.6% of protein
Raw token
HTH_LUXR:149:1.81e-18:201:53:58- Raw architecture: Response_reg:3:2.21e-29:103:101:111#HTH_LUXR:149:1.81e-18:201:53:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000424205::NZ_AUJL01000016.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span74056-75327Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000424205::NZ_AUJL01000016.1::G00029Context members
G605_RS20145G605_RS0109095
Partner locus tags
G605_RS20145G605_RS0109095
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_027638910.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG605_RS0109095Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AUJL01000016.1Sequence record reported by the local genomic context database.
Genomic interval74 704-75 327 nt624 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span74 056-75 327 ntGCF_000424205::NZ_AUJL01000016.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000424205::NZ_AUJL01000016.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AUJL01000016.1All displayed genes belong to this local TCS context.
Neighborhood span74 056-75 327 nt1 272 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
74 056 nt75 327 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G605_RS20145GCF_000424205#G605_RS20145
HKClassic
74 056-74 682 nt · Forward (+)
G605_RS0109095GCF_000424205#G605_RS0109095
RRNarLCurrent focus
74 704-75 327 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424205#G605_RS0109095The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2071451
Simplified PFAM architecture for RROC_2071451
PFAM domain coverage: 155 / 207 aa (74.9%)
1 aa207 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-104] | GerE[149-201]
- Domain count: 2
- Matched identifier: RROC_2071451
- Positioned domains: Response_reg 3-104 ; Response_reg 3-104 ; GerE 149-201 ; GerE 149-201
Cluster members and taxonomy
Representative gene: GCF_000424205#G605_RS0109095
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 692 · GCF_000424205
AssemblyASM42420v1 · Scaffoldhaploid
Genome composition3 542 160 bp · 31,0% GCClostridium cadaveris AGR2141
Signal transduction countsGenes 80 · HK 39 · RR 40CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key