1 HisKA#1
120-179 aa · 60 aa · 17.8% of protein
Raw token
HisKA:120:0.0000299:179:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G605_RS0106475
Histidine kinase, Classic
Clostridium cadaveris AGR2141 · GCF_000424205
ClassHKTypeClassicLength337 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000424205#G605_RS0106475Stable P2CS identifier used across views.
GenomeGCF_000424205Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length337 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 337 aa (49.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa337 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
224-330 aa · 107 aa · 31.8% of protein
Raw token
HATPase_c:224:1.1e-22:330:108:109- Raw architecture: HisKA:120:0.0000299:179:66:64#HATPase_c:224:1.1e-22:330:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000424205::NZ_AUJL01000008.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span101532-103218Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000424205::NZ_AUJL01000008.1::G00018Context members
G605_RS0106470G605_RS0106475
Partner locus tags
G605_RS0106470G605_RS0106475
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027638466.1Primary protein accession used for annex mappings.
UniProt accessionA0A1I2LUG1Primary UniProt accession resolved in the annex database.
UniProt IDA0A1I2LUG1_9CLOTDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG605_RS0106475Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AUJL01000008.1Sequence record reported by the local genomic context database.
Genomic interval102 205-103 218 nt1 014 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span101 532-103 218 ntGCF_000424205::NZ_AUJL01000008.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000424205::NZ_AUJL01000008.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AUJL01000008.1All displayed genes belong to this local TCS context.
Neighborhood span101 532-103 218 nt1 687 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
101 532 nt103 218 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G605_RS0106470GCF_000424205#G605_RS0106470
RROmpR
101 532-102 203 nt · Forward (+)
G605_RS0106475GCF_000424205#G605_RS0106475
HKClassicCurrent focus
102 205-103 218 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424205#G605_RS0106475The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2844421
Simplified PFAM architecture for HKOC_2844421
PFAM domain coverage: 106 / 337 aa (31.5%)
1 aa337 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[225-330]
- Domain count: 1
- Matched identifier: HKOC_2844421
- Positioned domains: HATPase_c 225-330
Cluster members and taxonomy
Representative gene: GCF_000424205#G605_RS0106475
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 692 · GCF_000424205
AssemblyASM42420v1 · Scaffoldhaploid
Genome composition3 542 160 bp · 31,0% GCClostridium cadaveris AGR2141
Signal transduction countsGenes 80 · HK 39 · RR 40CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key