1 HAMP#1
186-254 aa · 69 aa · 13.7% of protein
Raw token
HAMP:186:0.000000000265:254:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G605_RS0105400
Histidine kinase, Classic
Clostridium cadaveris AGR2141 · GCF_000424205
ClassHKTypeClassicLength505 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000424205#G605_RS0105400Stable P2CS identifier used across views.
GenomeGCF_000424205Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length505 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 505 aa (48.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa505 aa
Domain-by-domain annotation3 items
2 HisKA#2
279-345 aa · 67 aa · 13.3% of protein
Raw token
HisKA:279:7.27e-17:345:67:643 HATPase_c#3
389-496 aa · 108 aa · 21.4% of protein
Raw token
HATPase_c:389:2.13e-19:496:109:109- Raw architecture: HAMP:186:0.000000000265:254:69:69#HisKA:279:7.27e-17:345:67:64#HATPase_c:389:2.13e-19:496:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000424205::NZ_AUJL01000007.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span59013-61191Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000424205::NZ_AUJL01000007.1::G00015Context members
G605_RS0105400G605_RS0105405
Partner locus tags
G605_RS0105400G605_RS0105405
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_242831497.1Primary protein accession used for annex mappings.
UniProt accessionA0A1I2J4R1Primary UniProt accession resolved in the annex database.
UniProt IDA0A1I2J4R1_9CLOTDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG605_RS0105400Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AUJL01000007.1Sequence record reported by the local genomic context database.
Genomic interval59 013-60 530 nt1 518 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span59 013-61 191 ntGCF_000424205::NZ_AUJL01000007.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000424205::NZ_AUJL01000007.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AUJL01000007.1All displayed genes belong to this local TCS context.
Neighborhood span59 013-61 191 nt2 179 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 013 nt61 191 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G605_RS0105400GCF_000424205#G605_RS0105400
HKClassicCurrent focus
59 013-60 530 nt · Reverse (-)
G605_RS0105405GCF_000424205#G605_RS0105405
RROmpR
60 514-61 191 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424205#G605_RS0105400The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1449406
Simplified PFAM architecture for HKOC_1449406
PFAM domain coverage: 214 / 505 aa (42.4%)
1 aa505 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[204-253] | HisKA[279-344] | HATPase_c[389-486]
- Domain count: 3
- Matched identifier: HKOC_1449406
- Positioned domains: HAMP 204-253 ; HisKA 279-344 ; HATPase_c 389-486
Cluster members and taxonomy
Representative gene: GCF_000424205#G605_RS0105400
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 692 · GCF_000424205
AssemblyASM42420v1 · Scaffoldhaploid
Genome composition3 542 160 bp · 31,0% GCClostridium cadaveris AGR2141
Signal transduction countsGenes 80 · HK 39 · RR 40CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key