1 Response_reg#1
4-113 aa · 110 aa · 46.6% of protein
Raw token
Response_reg:4:5.64e-30:113:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G605_RS0104610
Response regulator LytTR family
Clostridium cadaveris AGR2141 · GCF_000424205
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000424205#G605_RS0104610Stable P2CS identifier used across views.
GenomeGCF_000424205Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage209 / 236 aa (88.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 LytTR#2
136-234 aa · 99 aa · 41.9% of protein
Raw token
LytTR:136:1.02e-31:234:99:98- Raw architecture: Response_reg:4:5.64e-30:113:112:111#LytTR:136:1.02e-31:234:99:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000424205::NZ_AUJL01000006.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span75325-77701Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000424205::NZ_AUJL01000006.1::G00013Context members
G605_RS0104610G605_RS0104615
Partner locus tags
G605_RS0104610G605_RS0104615
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027638122.1Primary protein accession used for annex mappings.
UniProt accessionA0A1I2JEK2Primary UniProt accession resolved in the annex database.
UniProt IDA0A1I2JEK2_9CLOTDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG605_RS0104610Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AUJL01000006.1Sequence record reported by the local genomic context database.
Genomic interval75 325-76 035 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span75 325-77 701 ntGCF_000424205::NZ_AUJL01000006.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000424205::NZ_AUJL01000006.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AUJL01000006.1All displayed genes belong to this local TCS context.
Neighborhood span75 325-77 701 nt2 377 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
75 325 nt77 701 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G605_RS0104610GCF_000424205#G605_RS0104610
RRLytTRCurrent focus
75 325-76 035 nt · Reverse (-)
G605_RS0104615GCF_000424205#G605_RS0104615
HKClassic
76 013-77 701 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424205#G605_RS0104610The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0989751
Simplified PFAM architecture for RROC_0989751
PFAM domain coverage: 206 / 236 aa (87.3%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-112] | LytTR[137-233]
- Domain count: 2
- Matched identifier: RROC_0989751
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; LytTR 137-233 ; LytTR 137-233
Cluster members and taxonomy
Representative gene: GCF_000424205#G605_RS0104610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 692 · GCF_000424205
AssemblyASM42420v1 · Scaffoldhaploid
Genome composition3 542 160 bp · 31,0% GCClostridium cadaveris AGR2141
Signal transduction countsGenes 80 · HK 39 · RR 40CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key