1 PocR#1
35-200 aa · 166 aa · 37.6% of protein
Raw token
PocR:35:1.34e-46:200:169:162P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G605_RS0100840
Histidine kinase, Classic
Clostridium cadaveris AGR2141 · GCF_000424205
ClassHKTypeClassicLength441 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000424205#G605_RS0100840Stable P2CS identifier used across views.
GenomeGCF_000424205Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
PocRHis_kinaseHATPase_c
Protein length441 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage346 / 441 aa (78.5%)Merged over positioned domains only.
Domain description1 PocR,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa441 aa
Domain-by-domain annotation3 items
2 His_kinase#2
232-311 aa · 80 aa · 18.1% of protein
Raw token
His_kinase:232:0.0000000000000019:311:80:803 HATPase_c#3
335-434 aa · 100 aa · 22.7% of protein
Raw token
HATPase_c:335:0.00000192:434:101:109- Raw architecture: PocR:35:1.34e-46:200:169:162#His_kinase:232:0.0000000000000019:311:80:80#HATPase_c:335:0.00000192:434:101:109
- Domain description: 1 PocR,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000424205::NZ_AUJL01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span184098-186430Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000424205::NZ_AUJL01000001.1::G00003Context members
G605_RS0100835G605_RS0100840
Partner locus tags
G605_RS0100835G605_RS0100840
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_027637436.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG605_RS0100840Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AUJL01000001.1Sequence record reported by the local genomic context database.
Genomic interval185 105-186 430 nt1 326 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span184 098-186 430 ntGCF_000424205::NZ_AUJL01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000424205::NZ_AUJL01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AUJL01000001.1All displayed genes belong to this local TCS context.
Neighborhood span184 098-186 430 nt2 333 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
184 098 nt186 430 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G605_RS0100835GCF_000424205#G605_RS0100835
RRunclassified
184 098-185 102 nt · Reverse (-)
G605_RS0100840GCF_000424205#G605_RS0100840
HKClassicCurrent focus
185 105-186 430 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424205#G605_RS0100840The current gene is the representative for this cluster.
PFAM architecturePocR + His_kinase2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2061770
Simplified PFAM architecture for HKOC_2061770
PFAM domain coverage: 243 / 441 aa (55.1%)
1 aa441 aa
PocRHis_kinase
- Simplified architecture: PocR + His_kinase
- Raw architecture: PocR[36-198] | His_kinase[232-311]
- Domain count: 2
- Matched identifier: HKOC_2061770
- Positioned domains: PocR 36-198 ; His_kinase 232-311
Cluster members and taxonomy
Representative gene: GCF_000424205#G605_RS0100840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 692 · GCF_000424205
AssemblyASM42420v1 · Scaffoldhaploid
Genome composition3 542 160 bp · 31,0% GCClostridium cadaveris AGR2141
Signal transduction countsGenes 80 · HK 39 · RR 40CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key