1 dCache_1#1
121-268 aa · 148 aa · 24.7% of protein
Raw token
dCache_1:121:0.00000000000000727:268:152:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G599_RS0110280
Histidine kinase, Classic
Blautia wexlerae AGR2146 · GCF_000424085
ClassHKTypeClassicLength599 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000424085#G599_RS0110280Stable P2CS identifier used across views.
GenomeGCF_000424085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length599 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage404 / 599 aa (67.4%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa599 aa
Domain-by-domain annotation4 items
2 HAMP#2
285-354 aa · 70 aa · 11.7% of protein
Raw token
HAMP:285:0.0000000143:354:70:693 His_kinase#3
369-448 aa · 80 aa · 13.4% of protein
Raw token
His_kinase:369:5.33e-34:448:80:804 HATPase_c#4
464-569 aa · 106 aa · 17.7% of protein
Raw token
HATPase_c:464:0.000000000000237:569:109:109- Raw architecture: dCache_1:121:0.00000000000000727:268:152:195#HAMP:285:0.0000000143:354:70:69#His_kinase:369:5.33e-34:448:80:80#HATPase_c:464:0.000000000000237:569:109:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000424085::NZ_AUJF01000041.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span22834-26304Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000424085::NZ_AUJF01000041.1::G00019Context members
G599_RS0110280G599_RS0110285
Partner locus tags
G599_RS0110280G599_RS0110285
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_081678871.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG599_RS0110280Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AUJF01000041.1Sequence record reported by the local genomic context database.
Genomic interval22 834-24 633 nt1 800 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span22 834-26 304 ntGCF_000424085::NZ_AUJF01000041.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000424085::NZ_AUJF01000041.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AUJF01000041.1All displayed genes belong to this local TCS context.
Neighborhood span22 834-26 304 nt3 471 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 834 nt26 304 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G599_RS0110280GCF_000424085#G599_RS0110280
HKClassicCurrent focus
22 834-24 633 nt · Reverse (-)
G599_RS0110285GCF_000424085#G599_RS0110285
RRunclassified
24 703-26 304 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424085#G599_RS0110280The current gene is the representative for this cluster.
PFAM architecturedCache_1 + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1057428
Simplified PFAM architecture for HKOC_1057428
PFAM domain coverage: 416 / 599 aa (69.4%)
1 aa599 aa
dCache_1His_kinaseHATPase_c
- Simplified architecture: dCache_1 + His_kinase + HATPase_c
- Raw architecture: dCache_1[39-268] | His_kinase[369-448] | HATPase_c[465-570]
- Domain count: 3
- Matched identifier: HKOC_1057428
- Positioned domains: dCache_1 39-268 ; His_kinase 369-448 ; HATPase_c 465-570
Cluster members and taxonomy
Representative gene: GCF_000424085#G599_RS0110280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 691 · GCF_000424085
AssemblyASM42408v1 · Scaffoldhaploid
Genome composition3 583 102 bp · 41,5% GCBlautia wexlerae AGR2146
Signal transduction countsGenes 67 · HK 29 · RR 34CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key