1 GAF_3#1
155-274 aa · 120 aa · 23.0% of protein
Raw token
GAF_3:155:0.0000365:274:126:129P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G599_RS0103680
Histidine kinase, Classic
Blautia wexlerae AGR2146 · GCF_000424085
ClassHKTypeClassicLength521 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000424085#G599_RS0103680Stable P2CS identifier used across views.
GenomeGCF_000424085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
GAF_3HisKAHATPase_c
Protein length521 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage301 / 521 aa (57.8%)Merged over positioned domains only.
Domain description1 GAF_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa521 aa
Domain-by-domain annotation3 items
2 HisKA#2
294-361 aa · 68 aa · 13.1% of protein
Raw token
HisKA:294:0.0000000000104:361:68:643 HATPase_c#3
404-516 aa · 113 aa · 21.7% of protein
Raw token
HATPase_c:404:2.26e-30:516:113:109- Raw architecture: GAF_3:155:0.0000365:274:126:129#HisKA:294:0.0000000000104:361:68:64#HATPase_c:404:2.26e-30:516:113:109
- Domain description: 1 GAF_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000424085::NZ_AUJF01000008.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span51137-53399Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000424085::NZ_AUJF01000008.1::G00005Context members
G599_RS0103680G599_RS0103685
Partner locus tags
G599_RS0103680G599_RS0103685
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_026648603.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG599_RS0103680Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AUJF01000008.1Sequence record reported by the local genomic context database.
Genomic interval51 137-52 702 nt1 566 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span51 137-53 399 ntGCF_000424085::NZ_AUJF01000008.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000424085::NZ_AUJF01000008.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AUJF01000008.1All displayed genes belong to this local TCS context.
Neighborhood span51 137-53 399 nt2 263 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 137 nt53 399 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G599_RS0103680GCF_000424085#G599_RS0103680
HKClassicCurrent focus
51 137-52 702 nt · Forward (+)
G599_RS0103685GCF_000424085#G599_RS0103685
RROmpR
52 695-53 399 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424085#G599_RS0103680The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1387724
Simplified PFAM architecture for HKOC_1387724
PFAM domain coverage: 286 / 521 aa (54.9%)
1 aa521 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[25-131] | HisKA[294-361] | HATPase_c[405-515]
- Domain count: 3
- Matched identifier: HKOC_1387724
- Positioned domains: DUF4118 25-131 ; HisKA 294-361 ; HATPase_c 405-515
Cluster members and taxonomy
Representative gene: GCF_000424085#G599_RS0103680
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 691 · GCF_000424085
AssemblyASM42408v1 · Scaffoldhaploid
Genome composition3 583 102 bp · 41,5% GCBlautia wexlerae AGR2146
Signal transduction countsGenes 67 · HK 29 · RR 34CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key