1 H_kinase_N#1
9-147 aa · 139 aa · 29.1% of protein
Raw token
H_kinase_N:9:4.71e-37:147:140:139P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D349_RS06060
Histidine kinase, Classic
Enterococcus faecalis UP2S-6 · GCF_000415425
ClassHKTypeClassicLength477 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000415425#D349_RS06060Stable P2CS identifier used across views.
GenomeGCF_000415425Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
H_kinase_NHisKA_2HATPase_c
Protein length477 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage303 / 477 aa (63.5%)Merged over positioned domains only.
Domain description1 H_kinase_N,1 HisKA_2,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA_2#2
280-354 aa · 75 aa · 15.7% of protein
Raw token
HisKA_2:280:1.08e-27:354:76:763 HATPase_c#3
380-468 aa · 89 aa · 18.7% of protein
Raw token
HATPase_c:380:0.000000000162:468:105:109- Raw architecture: H_kinase_N:9:4.71e-37:147:140:139#HisKA_2:280:1.08e-27:354:76:76#HATPase_c:380:0.000000000162:468:105:109
- Domain description: 1 H_kinase_N,1 HisKA_2,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000415425::NZ_KE352688.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span174043-176049Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD349_01438RefSeq proteinWP_002366726.1
Context group ID
GCF_000415425::NZ_KE352688.1::G00005Context members
D349_RS06060D349_RS06065
Partner locus tags
D349_RS06060D349_RS06065
Partner old locus tags
D349_01438D349_01439
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002366726.1Primary protein accession used for annex mappings.
UniProt accessionA0ABD7J4K8Primary UniProt accession resolved in the annex database.
UniProt IDA0ABD7J4K8_ENTFLDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD349_RS06060Primary locus identifier stored in the genes table.
Old locus tagD349_01438Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE352688.1Sequence record reported by the local genomic context database.
Genomic interval174 043-175 476 nt1 434 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span174 043-176 049 ntGCF_000415425::NZ_KE352688.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000415425::NZ_KE352688.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE352688.1All displayed genes belong to this local TCS context.
Neighborhood span174 043-176 049 nt2 007 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
174 043 nt176 049 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
D349_RS06060GCF_000415425#D349_RS06060
HKClassicCurrent focus
174 043-175 476 nt · Reverse (-)
D349_RS06065GCF_000415425#D349_RS06065
RRAmiR_NasR
175 477-176 049 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147495#HMPREF9516_RS14805Use this link to inspect the representative gene detail.
PFAM architectureGAF_PdtaS + HisKA_2 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1645594
Simplified PFAM architecture for HKOC_1645594
PFAM domain coverage: 305 / 477 aa (63.9%)
1 aa477 aa
GAF_PdtaSHisKA_2HATPase_c
- Simplified architecture: GAF_PdtaS + HisKA_2 + HATPase_c
- Raw architecture: GAF_PdtaS[4-146] | HisKA_2[280-352] | HATPase_c[380-468]
- Domain count: 3
- Matched identifier: HKOC_1645594
- Positioned domains: GAF_PdtaS 4-146 ; HisKA_2 280-352 ; HATPase_c 380-468
Cluster members and taxonomy
Representative gene: GCF_000147495#HMPREF9516_RS14805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 244 142 · GCF_000415425
AssemblyASM41542v2 · Scaffoldhaploid
Genome composition2 859 140 bp · 37,5% GCEnterococcus faecalis UP2S-6
Signal transduction countsGenes 24 · HK 11 · RR 13CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key