1 Response_reg#1
4-113 aa · 110 aa · 49.1% of protein
Raw token
Response_reg:4:1.55e-27:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D349_RS04580
Response regulator OmpR family
Enterococcus faecalis UP2S-6 · GCF_000415425
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000415425#D349_RS04580Stable P2CS identifier used across views.
GenomeGCF_000415425Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 224 aa (82.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-222 aa · 75 aa · 33.5% of protein
Raw token
Trans_reg_C:148:2.53e-31:222:76:77- Raw architecture: Response_reg:4:1.55e-27:113:111:111#Trans_reg_C:148:2.53e-31:222:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000415425::NZ_KE352682.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span89039-90752Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD349_01131RefSeq proteinWP_002355809.1
Context group ID
GCF_000415425::NZ_KE352682.1::G00004Context members
D349_RS04580D349_RS04585
Partner locus tags
D349_RS04580D349_RS04585
Partner old locus tags
D349_01131D349_01132
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002355809.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9TNJ0Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9TNJ0_ENTFLDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD349_RS04580Primary locus identifier stored in the genes table.
Old locus tagD349_01131Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE352682.1Sequence record reported by the local genomic context database.
Genomic interval89 039-89 713 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span89 039-90 752 ntGCF_000415425::NZ_KE352682.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000415425::NZ_KE352682.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE352682.1All displayed genes belong to this local TCS context.
Neighborhood span89 039-90 752 nt1 714 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
89 039 nt90 752 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
D349_RS04580GCF_000415425#D349_RS04580
RROmpRCurrent focus
89 039-89 713 nt · Forward (+)
D349_RS04585GCF_000415425#D349_RS04585
HKClassic
89 727-90 752 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147215#HMPREF9504_RS12550Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1529005
Simplified PFAM architecture for RROC_1529005
PFAM domain coverage: 185 / 224 aa (82.6%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[148-222]
- Domain count: 2
- Matched identifier: RROC_1529005
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 148-222 ; Trans_reg_C 148-222
Cluster members and taxonomy
Representative gene: GCF_000147215#HMPREF9504_RS12550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 244 142 · GCF_000415425
AssemblyASM41542v2 · Scaffoldhaploid
Genome composition2 859 140 bp · 37,5% GCEnterococcus faecalis UP2S-6
Signal transduction countsGenes 24 · HK 11 · RR 13CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key