1 Response_reg#1
4-112 aa · 109 aa · 44.7% of protein
Raw token
Response_reg:4:0.000000888:112:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C805_RS08155
Response regulator LytTR family
Eubacterium sp. 14-2 · GCF_000403845
ClassRRTypeLytTRLength244 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000403845#C805_RS08155Stable P2CS identifier used across views.
GenomeGCF_000403845Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length244 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage199 / 244 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa244 aa
Domain-by-domain annotation2 items
2 LytTR#2
155-244 aa · 90 aa · 36.9% of protein
Raw token
LytTR:155:6.14e-19:244:94:98- Raw architecture: Response_reg:4:0.000000888:112:109:111#LytTR:155:6.14e-19:244:94:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000403845::NZ_KE159567.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span198862-199596Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC805_00227RefSeq proteinWP_016213325.1
Context group ID
GCF_000403845::NZ_KE159567.1::G00005Context members
C805_RS08155
Partner locus tags
C805_RS08155
Partner old locus tags
C805_00227
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016213325.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC805_RS08155Primary locus identifier stored in the genes table.
Old locus tagC805_00227Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE159567.1Sequence record reported by the local genomic context database.
Genomic interval198 862-199 596 nt735 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span198 862-199 596 ntGCF_000403845::NZ_KE159567.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000403845::NZ_KE159567.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE159567.1All displayed genes belong to this local TCS context.
Neighborhood span198 862-199 596 nt735 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
198 862 nt199 596 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C805_RS08155GCF_000403845#C805_RS08155
RRLytTRCurrent focus
198 862-199 596 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000403845#C805_RS08155The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0806802
Simplified PFAM architecture for RROC_0806802
PFAM domain coverage: 204 / 244 aa (83.6%)
1 aa244 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-119] | LytTR[153-240]
- Domain count: 2
- Matched identifier: RROC_0806802
- Positioned domains: Response_reg 4-119 ; Response_reg 4-119 ; LytTR 153-240 ; LytTR 153-240
Cluster members and taxonomy
Representative gene: GCF_000403845#C805_RS08155
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 235 790 · GCF_000403845
AssemblyEuba_bact_14-2_V1 · Scaffoldhaploid
Genome composition3 996 868 bp · 45,0% GCEubacterium sp. 14-2
Signal transduction countsGenes 143 · HK 64 · RR 77CheA 2 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key