1 Response_reg#1
4-114 aa · 111 aa · 46.1% of protein
Raw token
Response_reg:4:2.63e-27:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IIQ_RS28075
Response regulator LytTR family
Bacillus cereus VD118 · GCF_000399525
ClassRRTypeLytTRLength241 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000399525#IIQ_RS28075Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage208 / 241 aa (86.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 LytTR#2
143-239 aa · 97 aa · 40.2% of protein
Raw token
LytTR:143:4.05e-37:239:97:98- Raw architecture: Response_reg:4:2.63e-27:114:113:111#LytTR:143:4.05e-37:239:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000399525::NZ_KB976800.1::G00075
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1866622-1869094Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIIQ_04288RefSeq proteinWP_016106783.1
Context group ID
GCF_000399525::NZ_KB976800.1::G00075Context members
IIQ_RS28075IIQ_RS28080
Partner locus tags
IIQ_RS28075IIQ_RS28080
Partner old locus tags
IIQ_04288IIQ_04289
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016106783.1Primary protein accession used for annex mappings.
UniProt accessionA0A1G4ETX9Primary UniProt accession resolved in the annex database.
UniProt IDA0A1G4ETX9_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIIQ_RS28075Primary locus identifier stored in the genes table.
Old locus tagIIQ_04288Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB976800.1Sequence record reported by the local genomic context database.
Genomic interval1 866 622-1 867 347 nt726 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 866 622-1 869 094 ntGCF_000399525::NZ_KB976800.1::G00075
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000399525::NZ_KB976800.1::G00075Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB976800.1All displayed genes belong to this local TCS context.
Neighborhood span1 866 622-1 869 094 nt2 473 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 866 622 nt1 869 094 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IIQ_RS28075GCF_000399525#IIQ_RS28075
RRLytTRCurrent focus
1 866 622-1 867 347 nt · Reverse (-)
IIQ_RS28080GCF_000399525#IIQ_RS28080
HKClassic
1 867 325-1 869 094 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000399525#IIQ_RS28075The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0863551
Simplified PFAM architecture for RROC_0863551
PFAM domain coverage: 206 / 241 aa (85.5%)
1 aa241 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-113] | LytTR[144-239]
- Domain count: 2
- Matched identifier: RROC_0863551
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; LytTR 144-239 ; LytTR 144-239
Cluster members and taxonomy
Representative gene: GCF_000399525#IIQ_RS28075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 231 · GCF_000399525
AssemblyBaci_cere_VD118_V1 · Scaffoldhaploid
Genome composition5 782 949 bp · 35,5% GCBacillus cereus VD118
Signal transduction countsGenes 127 · HK 69 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key