1 HisKA#1
121-175 aa · 55 aa · 16.2% of protein
Raw token
HisKA:121:0.000000612:175:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IK1_RS01940
Histidine kinase, Classic
Bacillus cereus VD146 · GCF_000399425
ClassHKTypeClassicLength340 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000399425#IK1_RS01940Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length340 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage165 / 340 aa (48.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
221-330 aa · 110 aa · 32.4% of protein
Raw token
HATPase_c:221:2.45e-20:330:110:109- Raw architecture: HisKA:121:0.000000612:175:61:64#HATPase_c:221:2.45e-20:330:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000399425::NZ_KB976675.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span305644-307334Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIK1_04317RefSeq proteinWP_016119313.1
Context group ID
GCF_000399425::NZ_KB976675.1::G00006Context members
IK1_RS01940IK1_RS01945
Partner locus tags
IK1_RS01940IK1_RS01945
Partner old locus tags
IK1_04317IK1_04318
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016119313.1Primary protein accession used for annex mappings.
UniProt accessionR8NIV6Primary UniProt accession resolved in the annex database.
UniProt IDR8NIV6_BACCXDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIK1_RS01940Primary locus identifier stored in the genes table.
Old locus tagIK1_04317Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB976675.1Sequence record reported by the local genomic context database.
Genomic interval305 644-306 666 nt1 023 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span305 644-307 334 ntGCF_000399425::NZ_KB976675.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000399425::NZ_KB976675.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB976675.1All displayed genes belong to this local TCS context.
Neighborhood span305 644-307 334 nt1 691 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
305 644 nt307 334 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IK1_RS01940GCF_000399425#IK1_RS01940
HKClassicCurrent focus
305 644-306 666 nt · Reverse (-)
IK1_RS01945GCF_000399425#IK1_RS01945
RROmpR
306 663-307 334 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000399425#IK1_RS01940The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2836611
Simplified PFAM architecture for HKOC_2836611
PFAM domain coverage: 111 / 340 aa (32.6%)
1 aa340 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[221-331]
- Domain count: 1
- Matched identifier: HKOC_2836611
- Positioned domains: HATPase_c 221-331
Cluster members and taxonomy
Representative gene: GCF_000399425#IK1_RS01940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 236 · GCF_000399425
AssemblyBaci_cere_VD146_V1 · Scaffoldhaploid
Genome composition6 109 375 bp · 35,0% GCBacillus cereus VD146
Signal transduction countsGenes 129 · HK 69 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key