1 HAMP#1
189-256 aa · 68 aa · 14.0% of protein
Raw token
HAMP:189:0.0000000000392:256:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
II1_RS20005
Histidine kinase, Classic
Bacillus cereus MC118 · GCF_000399245
ClassHKTypeClassicLength484 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000399245#II1_RS20005Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length484 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 484 aa (50.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa484 aa
Domain-by-domain annotation3 items
2 HisKA#2
262-327 aa · 66 aa · 13.6% of protein
Raw token
HisKA:262:0.000000000000086:327:66:643 HATPase_c#3
374-484 aa · 111 aa · 22.9% of protein
Raw token
HATPase_c:374:1.7e-33:484:111:109- Raw architecture: HAMP:189:0.0000000000392:256:70:69#HisKA:262:0.000000000000086:327:66:64#HATPase_c:374:1.7e-33:484:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000399245::NZ_KB976462.1::G00047
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span138686-140877Genomic interval covered by the local TCS group.
Identifiers
Old locus tagII1_00974RefSeq proteinWP_002159344.1
Context group ID
GCF_000399245::NZ_KB976462.1::G00047Context members
II1_RS20000II1_RS20005
Partner locus tags
II1_RS20000II1_RS20005
Partner old locus tags
II1_00973II1_00974
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002159344.1Primary protein accession used for annex mappings.
UniProt accessionJ8EZ14Primary UniProt accession resolved in the annex database.
UniProt IDJ8EZ14_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagII1_RS20005Primary locus identifier stored in the genes table.
Old locus tagII1_00974Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB976462.1Sequence record reported by the local genomic context database.
Genomic interval139 423-140 877 nt1 455 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span138 686-140 877 ntGCF_000399245::NZ_KB976462.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000399245::NZ_KB976462.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB976462.1All displayed genes belong to this local TCS context.
Neighborhood span138 686-140 877 nt2 192 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
138 686 nt140 877 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
II1_RS20000GCF_000399245#II1_RS20000
RROmpR
138 686-139 357 nt · Forward (+)
II1_RS20005GCF_000399245#II1_RS20005
HKClassicCurrent focus
139 423-140 877 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291155#II3_RS08360Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1584295
Simplified PFAM architecture for HKOC_1584295
PFAM domain coverage: 225 / 484 aa (46.5%)
1 aa484 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[207-256] | HisKA[263-327] | HATPase_c[374-483]
- Domain count: 3
- Matched identifier: HKOC_1584295
- Positioned domains: HAMP 207-256 ; HisKA 263-327 ; HATPase_c 374-483
Cluster members and taxonomy
Representative gene: GCF_000291155#II3_RS08360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 218 · GCF_000399245
AssemblyBaci_cere_MC118_V1 · Scaffoldhaploid
Genome composition5 608 415 bp · 35,0% GCBacillus cereus MC118
Signal transduction countsGenes 116 · HK 64 · RR 52CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key