1 PAS#1
111-200 aa · 90 aa · 15.7% of protein
Raw token
PAS:111:0.000000000605:200:90:113P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
II1_RS03120
Histidine kinase, Classic
Bacillus cereus MC118 · GCF_000399245
ClassHKTypeClassicLength574 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000399245#II1_RS03120Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
PASPAS_4HisKAHATPase_c
Protein length574 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage357 / 574 aa (62.2%)Merged over positioned domains only.
Domain description1 PAS,1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa574 aa
Domain-by-domain annotation4 items
2 PAS_4#2
243-346 aa · 104 aa · 18.1% of protein
Raw token
PAS_4:243:0.0000000000000478:346:109:1103 HisKA#3
362-421 aa · 60 aa · 10.5% of protein
Raw token
HisKA:362:0.00000000000000235:421:60:644 HATPase_c#4
468-570 aa · 103 aa · 17.9% of protein
Raw token
HATPase_c:468:1.29e-27:570:106:109- Raw architecture: PAS:111:0.000000000605:200:90:113#PAS_4:243:0.0000000000000478:346:109:110#HisKA:362:0.00000000000000235:421:60:64#HATPase_c:468:1.29e-27:570:106:109
- Domain description: 1 PAS,1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000399245::NZ_KB976354.1::G00004
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span8399-10123Genomic interval covered by the local TCS group.
Identifiers
Old locus tagII1_05394RefSeq proteinWP_002162244.1
Context group ID
GCF_000399245::NZ_KB976354.1::G00004Context members
II1_RS03120
Partner locus tags
II1_RS03120
Partner old locus tags
II1_05394
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002162244.1Primary protein accession used for annex mappings.
UniProt accessionJ8ES76Primary UniProt accession resolved in the annex database.
UniProt IDJ8ES76_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagII1_RS03120Primary locus identifier stored in the genes table.
Old locus tagII1_05394Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB976354.1Sequence record reported by the local genomic context database.
Genomic interval8 399-10 123 nt1 725 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 399-10 123 ntGCF_000399245::NZ_KB976354.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000399245::NZ_KB976354.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB976354.1All displayed genes belong to this local TCS context.
Neighborhood span8 399-10 123 nt1 725 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 399 nt10 123 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
II1_RS03120GCF_000399245#II1_RS03120
HKClassicCurrent focus
8 399-10 123 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291155#II3_RS27550Use this link to inspect the representative gene detail.
PFAM architecturePAS + PAS_4 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1192946
Simplified PFAM architecture for HKOC_1192946
PFAM domain coverage: 351 / 574 aa (61.1%)
1 aa574 aa
PASPAS_4HisKAHATPase_c
- Simplified architecture: PAS + PAS_4 + HisKA + HATPase_c
- Raw architecture: PAS[112-195] | PAS_4[243-346] | HisKA[362-421] | HATPase_c[468-570]
- Domain count: 4
- Matched identifier: HKOC_1192946
- Positioned domains: PAS 112-195 ; PAS_4 243-346 ; HisKA 362-421 ; HATPase_c 468-570
Cluster members and taxonomy
Representative gene: GCF_000291155#II3_RS27550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 218 · GCF_000399245
AssemblyBaci_cere_MC118_V1 · Scaffoldhaploid
Genome composition5 608 415 bp · 35,0% GCBacillus cereus MC118
Signal transduction countsGenes 116 · HK 64 · RR 52CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key