1 HAMP#1
164-233 aa · 70 aa · 14.3% of protein
Raw token
HAMP:164:0.0000000000000042:233:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
II1_RS10000
Histidine kinase, Classic
Bacillus cereus MC118 · GCF_000399245
ClassHKTypeClassicLength490 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000399245#II1_RS10000Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length490 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage237 / 490 aa (48.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa490 aa
Domain-by-domain annotation3 items
2 HisKA#2
258-323 aa · 66 aa · 13.5% of protein
Raw token
HisKA:258:0.000000000000467:323:66:643 HATPase_c#3
369-469 aa · 101 aa · 20.6% of protein
Raw token
HATPase_c:369:1.51e-16:469:101:109- Raw architecture: HAMP:164:0.0000000000000042:233:70:69#HisKA:258:0.000000000000467:323:66:64#HATPase_c:369:1.51e-16:469:101:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000399245::NZ_KB976431.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span44383-46513Genomic interval covered by the local TCS group.
Identifiers
Old locus tagII1_02505RefSeq proteinWP_002161654.1
Context group ID
GCF_000399245::NZ_KB976431.1::G00026Context members
II1_RS09995II1_RS10000
Partner locus tags
II1_RS09995II1_RS10000
Partner old locus tags
II1_02504II1_02505
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002161654.1Primary protein accession used for annex mappings.
UniProt accessionJ8F1U3Primary UniProt accession resolved in the annex database.
UniProt IDJ8F1U3_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagII1_RS10000Primary locus identifier stored in the genes table.
Old locus tagII1_02505Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB976431.1Sequence record reported by the local genomic context database.
Genomic interval45 041-46 513 nt1 473 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span44 383-46 513 ntGCF_000399245::NZ_KB976431.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000399245::NZ_KB976431.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB976431.1All displayed genes belong to this local TCS context.
Neighborhood span44 383-46 513 nt2 131 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 383 nt46 513 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
II1_RS09995GCF_000399245#II1_RS09995
RROmpR
44 383-45 048 nt · Forward (+)
II1_RS10000GCF_000399245#II1_RS10000
HKClassicCurrent focus
45 041-46 513 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291155#II3_RS24530Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1533827
Simplified PFAM architecture for HKOC_1533827
PFAM domain coverage: 227 / 490 aa (46.3%)
1 aa490 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[181-232] | HisKA[259-323] | HATPase_c[370-479]
- Domain count: 3
- Matched identifier: HKOC_1533827
- Positioned domains: HAMP 181-232 ; HisKA 259-323 ; HATPase_c 370-479
Cluster members and taxonomy
Representative gene: GCF_000291155#II3_RS24530
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 218 · GCF_000399245
AssemblyBaci_cere_MC118_V1 · Scaffoldhaploid
Genome composition5 608 415 bp · 35,0% GCBacillus cereus MC118
Signal transduction countsGenes 116 · HK 64 · RR 52CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key