1 PAS_4#1
229-318 aa · 90 aa · 11.0% of protein
Raw token
PAS_4:229:0.000014:318:103:110P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
II1_RS05145
Histidine kinase, Classic
Bacillus cereus MC118 · GCF_000399245
ClassHKTypeClassicLength820 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000399245#II1_RS05145Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
PAS_4PAS_9HisKAHATPase_c
Protein length820 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage463 / 820 aa (56.5%)Merged over positioned domains only.
Domain description1 PAS_4,2 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa820 aa
Domain-by-domain annotation5 items
2 PAS_9#2
340-445 aa · 106 aa · 12.9% of protein
Raw token
PAS_9:340:0.000000000000433:445:106:1023 PAS_9#3
478-580 aa · 103 aa · 12.6% of protein
Raw token
PAS_9:478:0.000000000716:580:105:1024 HisKA#4
598-659 aa · 62 aa · 7.6% of protein
Raw token
HisKA:598:0.0000000000000621:659:62:645 HATPase_c#5
706-807 aa · 102 aa · 12.4% of protein
Raw token
HATPase_c:706:1.66e-24:807:105:109- Raw architecture: PAS_4:229:0.000014:318:103:110#PAS_9:340:0.000000000000433:445:106:102#PAS_9:478:0.000000000716:580:105:102#HisKA:598:0.0000000000000621:659:62:64#HATPase_c:706:1.66e-24:807:105:109
- Domain description: 1 PAS_4,2 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000399245::NZ_KB976382.1::G00010
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span5378-7840Genomic interval covered by the local TCS group.
Identifiers
Old locus tagII1_05622RefSeq proteinWP_002162237.1
Context group ID
GCF_000399245::NZ_KB976382.1::G00010Context members
II1_RS05145
Partner locus tags
II1_RS05145
Partner old locus tags
II1_05622
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002162237.1Primary protein accession used for annex mappings.
UniProt accessionJ8EJE2Primary UniProt accession resolved in the annex database.
UniProt IDJ8EJE2_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagII1_RS05145Primary locus identifier stored in the genes table.
Old locus tagII1_05622Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB976382.1Sequence record reported by the local genomic context database.
Genomic interval5 378-7 840 nt2 463 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 378-7 840 ntGCF_000399245::NZ_KB976382.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000399245::NZ_KB976382.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB976382.1All displayed genes belong to this local TCS context.
Neighborhood span5 378-7 840 nt2 463 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 378 nt7 840 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
II1_RS05145GCF_000399245#II1_RS05145
HKClassicCurrent focus
5 378-7 840 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291155#II3_RS27510Use this link to inspect the representative gene detail.
PFAM architecture5TM-5TMR_LYT + PAS_9 + PAS_9 + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0529658
Simplified PFAM architecture for HKOC_0529658
PFAM domain coverage: 492 / 820 aa (60.0%)
1 aa820 aa
5TM-5TMR_LYTPAS_9PAS_9HisKAHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + PAS_9 + PAS_9 + HisKA + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[22-143] | PAS_9[340-445] | PAS_9[483-580] | HisKA[598-659] | HATPase_c[705-808]
- Domain count: 5
- Matched identifier: HKOC_0529658
- Positioned domains: 5TM-5TMR_LYT 22-143 ; PAS_9 340-445 ; PAS_9 483-580 ; HisKA 598-659 ; HATPase_c 705-808
Cluster members and taxonomy
Representative gene: GCF_000291155#II3_RS27510
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 218 · GCF_000399245
AssemblyBaci_cere_MC118_V1 · Scaffoldhaploid
Genome composition5 608 415 bp · 35,0% GCBacillus cereus MC118
Signal transduction countsGenes 116 · HK 64 · RR 52CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key