1 HAMP#1
188-258 aa · 71 aa · 14.3% of protein
Raw token
HAMP:188:2.33e-17:258:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IIC_RS28020
Histidine kinase, Classic
Bacillus cereus VD021 · GCF_000399145
ClassHKTypeClassicLength496 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000399145#IIC_RS28020Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length496 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 496 aa (49.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa496 aa
Domain-by-domain annotation3 items
2 HisKA#2
270-334 aa · 65 aa · 13.1% of protein
Raw token
HisKA:270:0.0000000000000147:334:65:643 HATPase_c#3
383-492 aa · 110 aa · 22.2% of protein
Raw token
HATPase_c:383:2.76e-30:492:110:109- Raw architecture: HAMP:188:2.33e-17:258:71:69#HisKA:270:0.0000000000000147:334:65:64#HATPase_c:383:2.76e-30:492:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000399145::NZ_KB976284.1::G00067
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span196836-199031Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIIC_05530RefSeq proteinWP_002141272.1
Context group ID
GCF_000399145::NZ_KB976284.1::G00067Context members
IIC_RS28020IIC_RS28025
Partner locus tags
IIC_RS28020IIC_RS28025
Partner old locus tags
IIC_05530IIC_05531
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002141272.1Primary protein accession used for annex mappings.
UniProt accessionR8H1K0Primary UniProt accession resolved in the annex database.
UniProt IDR8H1K0_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIIC_RS28020Primary locus identifier stored in the genes table.
Old locus tagIIC_05530Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB976284.1Sequence record reported by the local genomic context database.
Genomic interval196 836-198 326 nt1 491 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span196 836-199 031 ntGCF_000399145::NZ_KB976284.1::G00067
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000399145::NZ_KB976284.1::G00067Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB976284.1All displayed genes belong to this local TCS context.
Neighborhood span196 836-199 031 nt2 196 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
196 836 nt199 031 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IIC_RS28020GCF_000399145#IIC_RS28020
HKClassicCurrent focus
196 836-198 326 nt · Forward (+)
IIC_RS28025GCF_000399145#IIC_RS28025
RROmpR
198 342-199 031 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000399145#IIC_RS28020The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1498893
Simplified PFAM architecture for HKOC_1498893
PFAM domain coverage: 229 / 496 aa (46.2%)
1 aa496 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[206-258] | HisKA[270-334] | HATPase_c[383-493]
- Domain count: 3
- Matched identifier: HKOC_1498893
- Positioned domains: HAMP 206-258 ; HisKA 270-334 ; HATPase_c 383-493
Cluster members and taxonomy
Representative gene: GCF_000399145#IIC_RS28020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 224 · GCF_000399145
AssemblyBaci_cere_VD021_V1 · Scaffoldhaploid
Genome composition6 097 836 bp · 35,0% GCBacillus cereus VD021
Signal transduction countsGenes 121 · HK 65 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key