1 Response_reg#1
5-115 aa · 111 aa · 91.0% of protein
Raw token
Response_reg:5:8e-36:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IKK_RS24265
Response regulator, CheY family
Bacillus mycoides · GCF_000399045
ClassRRTypeCheYLength122 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000399045#IKK_RS24265Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length122 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage111 / 122 aa (91.0%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa122 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:8e-36:115:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000399045::NZ_KB976199.1::G00072
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span244959-245327Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIKK_04879RefSeq proteinWP_000398592.1
Context group ID
GCF_000399045::NZ_KB976199.1::G00072Context members
IKK_RS24265
Partner locus tags
IKK_RS24265
Partner old locus tags
IKK_04879
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000398592.1Primary protein accession used for annex mappings.
UniProt accessionJ8C2Y1Primary UniProt accession resolved in the annex database.
UniProt IDJ8C2Y1_BACCEDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIKK_RS24265Primary locus identifier stored in the genes table.
Old locus tagIKK_04879Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB976199.1Sequence record reported by the local genomic context database.
Genomic interval244 959-245 327 nt369 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span244 959-245 327 ntGCF_000399045::NZ_KB976199.1::G00072
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000399045::NZ_KB976199.1::G00072Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB976199.1All displayed genes belong to this local TCS context.
Neighborhood span244 959-245 327 nt369 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
244 959 nt245 327 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
IKK_RS24265GCF_000399045#IKK_RS24265
RRCheYCurrent focus
244 959-245 327 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS23750Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2402598
Simplified PFAM architecture for RROC_2402598
PFAM domain coverage: 111 / 122 aa (91.0%)
1 aa122 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-115]
- Domain count: 1
- Matched identifier: RROC_2402598
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS23750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_000399045
AssemblyBaci_cere_VDM019_V1 · Scaffoldhaploid
Genome composition6 008 443 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 130 · HK 69 · RR 61CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key