1 HisKA#1
108-174 aa · 67 aa · 19.9% of protein
Raw token
HisKA:108:4.01e-16:174:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IKK_RS01005
Histidine kinase, Classic
Bacillus mycoides · GCF_000399045
ClassHKTypeClassicLength337 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000399045#IKK_RS01005Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length337 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 337 aa (52.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa337 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
221-330 aa · 110 aa · 32.6% of protein
Raw token
HATPase_c:221:1.51e-27:330:110:109- Raw architecture: HisKA:108:4.01e-16:174:67:64#HATPase_c:221:1.51e-27:330:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000399045::NZ_KB976196.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span202965-204681Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIKK_00186RefSeq proteinWP_002170135.1
Context group ID
GCF_000399045::NZ_KB976196.1::G00003Context members
IKK_RS01005IKK_RS01010
Partner locus tags
IKK_RS01005IKK_RS01010
Partner old locus tags
IKK_00186IKK_00187
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002170135.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9QUC5Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9QUC5_BACMYDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIKK_RS01005Primary locus identifier stored in the genes table.
Old locus tagIKK_00186Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB976196.1Sequence record reported by the local genomic context database.
Genomic interval202 965-203 978 nt1 014 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span202 965-204 681 ntGCF_000399045::NZ_KB976196.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000399045::NZ_KB976196.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB976196.1All displayed genes belong to this local TCS context.
Neighborhood span202 965-204 681 nt1 717 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
202 965 nt204 681 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IKK_RS01005GCF_000399045#IKK_RS01005
HKClassicCurrent focus
202 965-203 978 nt · Reverse (-)
IKK_RS01010GCF_000399045#IKK_RS01010
RROmpR
203 968-204 681 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290895#III_RS30070Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2844364
Simplified PFAM architecture for HKOC_2844364
PFAM domain coverage: 177 / 337 aa (52.5%)
1 aa337 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[108-174] | HATPase_c[222-331]
- Domain count: 2
- Matched identifier: HKOC_2844364
- Positioned domains: HisKA 108-174 ; HATPase_c 222-331
Cluster members and taxonomy
Representative gene: GCF_000290895#III_RS30070
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_000399045
AssemblyBaci_cere_VDM019_V1 · Scaffoldhaploid
Genome composition6 008 443 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 130 · HK 69 · RR 61CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key