1 Response_reg#1
6-120 aa · 115 aa · 43.6% of protein
Raw token
Response_reg:6:1.76e-28:120:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IKK_RS19570
Response regulator Spo0A family
Bacillus mycoides · GCF_000399045
ClassRRTypeSpo0ALength264 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000399045#IKK_RS19570Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length264 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage219 / 264 aa (83.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa264 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
154-257 aa · 104 aa · 39.4% of protein
Raw token
Spo0A_C:154:3.12e-65:257:104:104- Raw architecture: Response_reg:6:1.76e-28:120:115:111#Spo0A_C:154:3.12e-65:257:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000399045::NZ_KB976196.1::G00057
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span3923878-3924672Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIKK_03962RefSeq proteinWP_002015081.1
Context group ID
GCF_000399045::NZ_KB976196.1::G00057Context members
IKK_RS19570
Partner locus tags
IKK_RS19570
Partner old locus tags
IKK_03962
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002015081.1Primary protein accession used for annex mappings.
UniProt accessionR8I3Q7Primary UniProt accession resolved in the annex database.
UniProt IDR8I3Q7_BACCEDisplay identifier provided by UniProt.
GO / PubMed8 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIKK_RS19570Primary locus identifier stored in the genes table.
Old locus tagIKK_03962Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB976196.1Sequence record reported by the local genomic context database.
Genomic interval3 923 878-3 924 672 nt795 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 923 878-3 924 672 ntGCF_000399045::NZ_KB976196.1::G00057
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000399045::NZ_KB976196.1::G00057Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB976196.1All displayed genes belong to this local TCS context.
Neighborhood span3 923 878-3 924 672 nt795 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 923 878 nt3 924 672 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
IKK_RS19570GCF_000399045#IKK_RS19570
RRSpo0ACurrent focus
3 923 878-3 924 672 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS19180Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0634311
Simplified PFAM architecture for RROC_0634311
PFAM domain coverage: 219 / 264 aa (83.0%)
1 aa264 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[6-120] | Spo0A_C[154-257]
- Domain count: 2
- Matched identifier: RROC_0634311
- Positioned domains: Response_reg 6-120 ; Response_reg 6-120 ; Spo0A_C 154-257 ; Spo0A_C 154-257
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS19180
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_000399045
AssemblyBaci_cere_VDM019_V1 · Scaffoldhaploid
Genome composition6 008 443 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 130 · HK 69 · RR 61CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key