1 HAMP#1
164-233 aa · 70 aa · 14.3% of protein
Raw token
HAMP:164:0.00000000000000219:233:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IKK_RS11665
Histidine kinase, Classic
Bacillus mycoides · GCF_000399045
ClassHKTypeClassicLength490 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000399045#IKK_RS11665Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length490 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 490 aa (50.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa490 aa
Domain-by-domain annotation3 items
2 HisKA#2
258-323 aa · 66 aa · 13.5% of protein
Raw token
HisKA:258:0.000000000000042:323:66:643 HATPase_c#3
369-480 aa · 112 aa · 22.9% of protein
Raw token
HATPase_c:369:7.07e-17:480:113:109- Raw architecture: HAMP:164:0.00000000000000219:233:70:69#HisKA:258:0.000000000000042:323:66:64#HATPase_c:369:7.07e-17:480:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000399045::NZ_KB976196.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2390520-2392650Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIKK_02339RefSeq proteinWP_016127047.1
Context group ID
GCF_000399045::NZ_KB976196.1::G00035Context members
IKK_RS11665IKK_RS11670
Partner locus tags
IKK_RS11665IKK_RS11670
Partner old locus tags
IKK_02339IKK_02340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016127047.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIKK_RS11665Primary locus identifier stored in the genes table.
Old locus tagIKK_02339Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB976196.1Sequence record reported by the local genomic context database.
Genomic interval2 390 520-2 391 992 nt1 473 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 390 520-2 392 650 ntGCF_000399045::NZ_KB976196.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000399045::NZ_KB976196.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB976196.1All displayed genes belong to this local TCS context.
Neighborhood span2 390 520-2 392 650 nt2 131 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 390 520 nt2 392 650 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IKK_RS11665GCF_000399045#IKK_RS11665
HKClassicCurrent focus
2 390 520-2 391 992 nt · Reverse (-)
IKK_RS11670GCF_000399045#IKK_RS11670
RROmpR
2 391 985-2 392 650 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000399045#IKK_RS11665The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1533944
Simplified PFAM architecture for HKOC_1533944
PFAM domain coverage: 229 / 490 aa (46.7%)
1 aa490 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[181-233] | HisKA[259-323] | HATPase_c[370-480]
- Domain count: 3
- Matched identifier: HKOC_1533944
- Positioned domains: HAMP 181-233 ; HisKA 259-323 ; HATPase_c 370-480
Cluster members and taxonomy
Representative gene: GCF_000399045#IKK_RS11665
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_000399045
AssemblyBaci_cere_VDM019_V1 · Scaffoldhaploid
Genome composition6 008 443 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 130 · HK 69 · RR 61CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key