1 HisKA_3#1
177-244 aa · 68 aa · 18.6% of protein
Raw token
HisKA_3:177:6.53e-20:244:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IKK_RS07795
Histidine kinase, Classic
Bacillus mycoides · GCF_000399045
ClassHKTypeClassicLength366 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000399045#IKK_RS07795Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length366 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage145 / 366 aa (39.6%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa366 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
289-365 aa · 77 aa · 21.0% of protein
Raw token
HATPase_c:289:0.000000000135:365:97:109- Raw architecture: HisKA_3:177:6.53e-20:244:68:68#HATPase_c:289:0.000000000135:365:97:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000399045::NZ_KB976196.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1565801-1567544Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIKK_01549RefSeq proteinWP_016126755.1
Context group ID
GCF_000399045::NZ_KB976196.1::G00025Context members
IKK_RS07790IKK_RS07795
Partner locus tags
IKK_RS07790IKK_RS07795
Partner old locus tags
IKK_01548IKK_01549
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016126755.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP8KTS6Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP8KTS6_BACMYDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIKK_RS07795Primary locus identifier stored in the genes table.
Old locus tagIKK_01549Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB976196.1Sequence record reported by the local genomic context database.
Genomic interval1 566 444-1 567 544 nt1 101 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 565 801-1 567 544 ntGCF_000399045::NZ_KB976196.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000399045::NZ_KB976196.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB976196.1All displayed genes belong to this local TCS context.
Neighborhood span1 565 801-1 567 544 nt1 744 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 565 801 nt1 567 544 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IKK_RS07790GCF_000399045#IKK_RS07790
RRNarL
1 565 801-1 566 439 nt · Forward (+)
IKK_RS07795GCF_000399045#IKK_RS07795
HKClassicCurrent focus
1 566 444-1 567 544 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS08520Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2711905
Simplified PFAM architecture for HKOC_2711905
PFAM domain coverage: 67 / 366 aa (18.3%)
1 aa366 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[177-243]
- Domain count: 1
- Matched identifier: HKOC_2711905
- Positioned domains: HisKA_3 177-243
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS08520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_000399045
AssemblyBaci_cere_VDM019_V1 · Scaffoldhaploid
Genome composition6 008 443 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 130 · HK 69 · RR 61CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key