1 HisKA#1
188-248 aa · 61 aa · 15.2% of protein
Raw token
HisKA:188:0.00000000000022:248:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IKK_RS05980
Histidine kinase, Classic
Bacillus mycoides · GCF_000399045
ClassHKTypeClassicLength402 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000399045#IKK_RS05980Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length402 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 402 aa (41.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa402 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
294-398 aa · 105 aa · 26.1% of protein
Raw token
HATPase_c:294:1.18e-22:398:108:109- Raw architecture: HisKA:188:0.00000000000022:248:61:64#HATPase_c:294:1.18e-22:398:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000399045::NZ_KB976196.1::G00019
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1219792-1221000Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIKK_01179RefSeq proteinWP_002186353.1
Context group ID
GCF_000399045::NZ_KB976196.1::G00019Context members
IKK_RS05980
Partner locus tags
IKK_RS05980
Partner old locus tags
IKK_01179
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002186353.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP8GXM0Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP8GXM0_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIKK_RS05980Primary locus identifier stored in the genes table.
Old locus tagIKK_01179Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB976196.1Sequence record reported by the local genomic context database.
Genomic interval1 219 792-1 221 000 nt1 209 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 219 792-1 221 000 ntGCF_000399045::NZ_KB976196.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000399045::NZ_KB976196.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB976196.1All displayed genes belong to this local TCS context.
Neighborhood span1 219 792-1 221 000 nt1 209 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 219 792 nt1 221 000 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
IKK_RS05980GCF_000399045#IKK_RS05980
HKClassicCurrent focus
1 219 792-1 221 000 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS06665Use this link to inspect the representative gene detail.
PFAM architecture5TM-5TMR_LYT + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2422816
Simplified PFAM architecture for HKOC_2422816
PFAM domain coverage: 314 / 402 aa (78.1%)
1 aa402 aa
5TM-5TMR_LYTHisKAHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + HisKA + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[16-165] | HisKA[188-248] | HATPase_c[296-398]
- Domain count: 3
- Matched identifier: HKOC_2422816
- Positioned domains: 5TM-5TMR_LYT 16-165 ; HisKA 188-248 ; HATPase_c 296-398
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS06665
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_000399045
AssemblyBaci_cere_VDM019_V1 · Scaffoldhaploid
Genome composition6 008 443 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 130 · HK 69 · RR 61CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key