1 HAMP#1
192-259 aa · 68 aa · 14.0% of protein
Raw token
HAMP:192:0.000000000127:259:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IKK_RS02255
Histidine kinase, Classic
Bacillus mycoides · GCF_000399045
ClassHKTypeClassicLength487 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000399045#IKK_RS02255Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length487 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 487 aa (50.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa487 aa
Domain-by-domain annotation3 items
2 HisKA#2
265-330 aa · 66 aa · 13.6% of protein
Raw token
HisKA:265:0.0000000000000584:330:66:643 HATPase_c#3
377-486 aa · 110 aa · 22.6% of protein
Raw token
HATPase_c:377:1.56e-32:486:110:109- Raw architecture: HAMP:192:0.000000000127:259:70:69#HisKA:265:0.0000000000000584:330:66:64#HATPase_c:377:1.56e-32:486:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000399045::NZ_KB976196.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span479744-481944Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIKK_00421RefSeq proteinWP_003187240.1
Context group ID
GCF_000399045::NZ_KB976196.1::G00009Context members
IKK_RS02255IKK_RS02260
Partner locus tags
IKK_RS02255IKK_RS02260
Partner old locus tags
IKK_00421IKK_00422
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003187240.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX6Z959Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX6Z959_BACMYDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIKK_RS02255Primary locus identifier stored in the genes table.
Old locus tagIKK_00421Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB976196.1Sequence record reported by the local genomic context database.
Genomic interval479 744-481 207 nt1 464 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span479 744-481 944 ntGCF_000399045::NZ_KB976196.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000399045::NZ_KB976196.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB976196.1All displayed genes belong to this local TCS context.
Neighborhood span479 744-481 944 nt2 201 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
479 744 nt481 944 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IKK_RS02255GCF_000399045#IKK_RS02255
HKClassicCurrent focus
479 744-481 207 nt · Reverse (-)
IKK_RS02260GCF_000399045#IKK_RS02260
RROmpR
481 273-481 944 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS02540Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1559453
Simplified PFAM architecture for HKOC_1559453
PFAM domain coverage: 225 / 487 aa (46.2%)
1 aa487 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[210-259] | HisKA[266-330] | HATPase_c[377-486]
- Domain count: 3
- Matched identifier: HKOC_1559453
- Positioned domains: HAMP 210-259 ; HisKA 266-330 ; HATPase_c 377-486
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS02540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_000399045
AssemblyBaci_cere_VDM019_V1 · Scaffoldhaploid
Genome composition6 008 443 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 130 · HK 69 · RR 61CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key