1 Response_reg#1
5-114 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:5:6.13e-36:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ICC_RS03625
Response regulator OmpR family
Bacillus cereus BAG1X1-1 · GCF_000399005
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000399005#ICC_RS03625Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 229 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-225 aa · 73 aa · 31.9% of protein
Raw token
Trans_reg_C:153:7.82e-29:225:76:77- Raw architecture: Response_reg:5:6.13e-36:114:111:111#Trans_reg_C:153:7.82e-29:225:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000399005::NZ_KB976160.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span733450-735989Genomic interval covered by the local TCS group.
Identifiers
Old locus tagICC_00713RefSeq proteinWP_016079950.1
Context group ID
GCF_000399005::NZ_KB976160.1::G00014Context members
ICC_RS03625ICC_RS03630
Partner locus tags
ICC_RS03625ICC_RS03630
Partner old locus tags
ICC_00713ICC_00714
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016079950.1Primary protein accession used for annex mappings.
UniProt accessionA0A9W3XBA3Primary UniProt accession resolved in the annex database.
UniProt IDA0A9W3XBA3_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagICC_RS03625Primary locus identifier stored in the genes table.
Old locus tagICC_00713Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB976160.1Sequence record reported by the local genomic context database.
Genomic interval733 450-734 139 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span733 450-735 989 ntGCF_000399005::NZ_KB976160.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000399005::NZ_KB976160.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB976160.1All displayed genes belong to this local TCS context.
Neighborhood span733 450-735 989 nt2 540 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
733 450 nt735 989 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ICC_RS03625GCF_000399005#ICC_RS03625
RROmpRCurrent focus
733 450-734 139 nt · Forward (+)
ICC_RS03630GCF_000399005#ICC_RS03630
HKClassic
734 136-735 989 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000399005#ICC_RS03625The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1249239
Simplified PFAM architecture for RROC_1249239
PFAM domain coverage: 181 / 229 aa (79.0%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[154-225]
- Domain count: 2
- Matched identifier: RROC_1249239
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 154-225 ; Trans_reg_C 154-225
Cluster members and taxonomy
Representative gene: GCF_000399005#ICC_RS03625
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 170 · GCF_000399005
AssemblyBaci_cere_BAG1X1-1_G13150_V1 · Scaffoldhaploid
Genome composition6 542 829 bp · 34,5% GCBacillus cereus BAG1X1-1
Signal transduction countsGenes 117 · HK 63 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key