1 HAMP#1
305-372 aa · 68 aa · 11.1% of protein
Raw token
HAMP:305:0.0000000000000592:372:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IGA_RS16670
Histidine kinase, Classic
Bacillus cereus HuA3-9 · GCF_000398965
ClassHKTypeClassicLength611 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000398965#IGA_RS16670Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length611 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 611 aa (39.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa611 aa
Domain-by-domain annotation3 items
2 HisKA#2
392-456 aa · 65 aa · 10.6% of protein
Raw token
HisKA:392:0.00000000000000259:456:65:643 HATPase_c#3
500-610 aa · 111 aa · 18.2% of protein
Raw token
HATPase_c:500:1.74e-22:610:112:109- Raw architecture: HAMP:305:0.0000000000000592:372:68:69#HisKA:392:0.00000000000000259:456:65:64#HATPase_c:500:1.74e-22:610:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000398965::NZ_KB976145.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span69459-71980Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIGA_02595RefSeq proteinWP_016095923.1
Context group ID
GCF_000398965::NZ_KB976145.1::G00043Context members
IGA_RS16665IGA_RS16670
Partner locus tags
IGA_RS16665IGA_RS16670
Partner old locus tags
IGA_02594IGA_02595
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016095923.1Primary protein accession used for annex mappings.
UniProt accessionR8D296Primary UniProt accession resolved in the annex database.
UniProt IDR8D296_BACCEDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIGA_RS16670Primary locus identifier stored in the genes table.
Old locus tagIGA_02595Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB976145.1Sequence record reported by the local genomic context database.
Genomic interval70 145-71 980 nt1 836 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span69 459-71 980 ntGCF_000398965::NZ_KB976145.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000398965::NZ_KB976145.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB976145.1All displayed genes belong to this local TCS context.
Neighborhood span69 459-71 980 nt2 522 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
69 459 nt71 980 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IGA_RS16665GCF_000398965#IGA_RS16665
RROmpR
69 459-70 148 nt · Forward (+)
IGA_RS16670GCF_000398965#IGA_RS16670
HKClassicCurrent focus
70 145-71 980 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000398965#IGA_RS16670The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1000836
Simplified PFAM architecture for HKOC_1000836
PFAM domain coverage: 225 / 611 aa (36.8%)
1 aa611 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[323-372] | HisKA[392-456] | HATPase_c[501-610]
- Domain count: 3
- Matched identifier: HKOC_1000836
- Positioned domains: HAMP 323-372 ; HisKA 392-456 ; HATPase_c 501-610
Cluster members and taxonomy
Representative gene: GCF_000398965#IGA_RS16670
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 205 · GCF_000398965
AssemblyBaci_cere_HuA3-9_V1 · Scaffoldhaploid
Genome composition6 241 316 bp · 35,0% GCBacillus cereus HuA3-9
Signal transduction countsGenes 122 · HK 65 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key