1 HAMP#1
171-241 aa · 71 aa · 15.0% of protein
Raw token
HAMP:171:0.00000000023:241:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IGA_RS13020
Histidine kinase, Classic
Bacillus cereus HuA3-9 · GCF_000398965
ClassHKTypeClassicLength472 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000398965#IGA_RS13020Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length472 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 472 aa (52.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa472 aa
Domain-by-domain annotation3 items
2 HisKA#2
245-312 aa · 68 aa · 14.4% of protein
Raw token
HisKA:245:1.46e-16:312:68:643 HATPase_c#3
362-470 aa · 109 aa · 23.1% of protein
Raw token
HATPase_c:362:5.24e-28:470:109:109- Raw architecture: HAMP:171:0.00000000023:241:71:69#HisKA:245:1.46e-16:312:68:64#HATPase_c:362:5.24e-28:470:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000398965::NZ_KB976136.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span361662-363751Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIGA_01902RefSeq proteinWP_016095470.1
Context group ID
GCF_000398965::NZ_KB976136.1::G00029Context members
IGA_RS13020IGA_RS13025
Partner locus tags
IGA_RS13020IGA_RS13025
Partner old locus tags
IGA_01902IGA_01903
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016095470.1Primary protein accession used for annex mappings.
UniProt accessionR8D766Primary UniProt accession resolved in the annex database.
UniProt IDR8D766_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIGA_RS13020Primary locus identifier stored in the genes table.
Old locus tagIGA_01902Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB976136.1Sequence record reported by the local genomic context database.
Genomic interval361 662-363 080 nt1 419 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span361 662-363 751 ntGCF_000398965::NZ_KB976136.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000398965::NZ_KB976136.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB976136.1All displayed genes belong to this local TCS context.
Neighborhood span361 662-363 751 nt2 090 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
361 662 nt363 751 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IGA_RS13020GCF_000398965#IGA_RS13020
HKClassicCurrent focus
361 662-363 080 nt · Reverse (-)
IGA_RS13025GCF_000398965#IGA_RS13025
RROmpR
363 077-363 751 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000398965#IGA_RS13020The current gene is the representative for this cluster.
PFAM architectureArlS_N + HAMP + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1696909
Simplified PFAM architecture for HKOC_1696909
PFAM domain coverage: 353 / 472 aa (74.8%)
1 aa472 aa
ArlS_NHAMPHisKAHATPase_c
- Simplified architecture: ArlS_N + HAMP + HisKA + HATPase_c
- Raw architecture: ArlS_N[42-165] | HAMP[188-240] | HisKA[246-312] | HATPase_c[361-469]
- Domain count: 4
- Matched identifier: HKOC_1696909
- Positioned domains: ArlS_N 42-165 ; HAMP 188-240 ; HisKA 246-312 ; HATPase_c 361-469
Cluster members and taxonomy
Representative gene: GCF_000398965#IGA_RS13020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 205 · GCF_000398965
AssemblyBaci_cere_HuA3-9_V1 · Scaffoldhaploid
Genome composition6 241 316 bp · 35,0% GCBacillus cereus HuA3-9
Signal transduction countsGenes 122 · HK 65 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key