1 HAMP#1
164-233 aa · 70 aa · 14.3% of protein
Raw token
HAMP:164:0.00000000000000223:233:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IGA_RS12705
Histidine kinase, Classic
Bacillus cereus HuA3-9 · GCF_000398965
ClassHKTypeClassicLength490 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000398965#IGA_RS12705Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length490 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage237 / 490 aa (48.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa490 aa
Domain-by-domain annotation3 items
2 HisKA#2
258-323 aa · 66 aa · 13.5% of protein
Raw token
HisKA:258:0.0000000000000678:323:66:643 HATPase_c#3
369-469 aa · 101 aa · 20.6% of protein
Raw token
HATPase_c:369:2.5e-17:469:101:109- Raw architecture: HAMP:164:0.00000000000000223:233:70:69#HisKA:258:0.0000000000000678:323:66:64#HATPase_c:369:2.5e-17:469:101:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000398965::NZ_KB976136.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span300589-302719Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIGA_01837RefSeq proteinWP_016095430.1
Context group ID
GCF_000398965::NZ_KB976136.1::G00028Context members
IGA_RS12705IGA_RS12710
Partner locus tags
IGA_RS12705IGA_RS12710
Partner old locus tags
IGA_01837IGA_01838
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016095430.1Primary protein accession used for annex mappings.
UniProt accessionR8D700Primary UniProt accession resolved in the annex database.
UniProt IDR8D700_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIGA_RS12705Primary locus identifier stored in the genes table.
Old locus tagIGA_01837Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB976136.1Sequence record reported by the local genomic context database.
Genomic interval300 589-302 061 nt1 473 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span300 589-302 719 ntGCF_000398965::NZ_KB976136.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000398965::NZ_KB976136.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB976136.1All displayed genes belong to this local TCS context.
Neighborhood span300 589-302 719 nt2 131 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
300 589 nt302 719 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IGA_RS12705GCF_000398965#IGA_RS12705
HKClassicCurrent focus
300 589-302 061 nt · Reverse (-)
IGA_RS12710GCF_000398965#IGA_RS12710
RROmpR
302 054-302 719 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000398965#IGA_RS12705The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1533942
Simplified PFAM architecture for HKOC_1533942
PFAM domain coverage: 228 / 490 aa (46.5%)
1 aa490 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[181-233] | HisKA[259-323] | HATPase_c[370-479]
- Domain count: 3
- Matched identifier: HKOC_1533942
- Positioned domains: HAMP 181-233 ; HisKA 259-323 ; HATPase_c 370-479
Cluster members and taxonomy
Representative gene: GCF_000398965#IGA_RS12705
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 205 · GCF_000398965
AssemblyBaci_cere_HuA3-9_V1 · Scaffoldhaploid
Genome composition6 241 316 bp · 35,0% GCBacillus cereus HuA3-9
Signal transduction countsGenes 122 · HK 65 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key