1 Response_reg#1
5-114 aa · 110 aa · 47.6% of protein
Raw token
Response_reg:5:5.15e-37:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IGA_RS12285
Response regulator OmpR family
Bacillus cereus HuA3-9 · GCF_000398965
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000398965#IGA_RS12285Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 231 aa (79.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-229 aa · 74 aa · 32.0% of protein
Raw token
Trans_reg_C:156:6.03e-31:229:74:77- Raw architecture: Response_reg:5:5.15e-37:114:111:111#Trans_reg_C:156:6.03e-31:229:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000398965::NZ_KB976136.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span202742-204584Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIGA_01751RefSeq proteinWP_002065541.1
Context group ID
GCF_000398965::NZ_KB976136.1::G00026Context members
IGA_RS12280IGA_RS12285
Partner locus tags
IGA_RS12280IGA_RS12285
Partner old locus tags
IGA_01750IGA_01751
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002065541.1Primary protein accession used for annex mappings.
UniProt accessionC2XUG1Primary UniProt accession resolved in the annex database.
UniProt IDC2XUG1_BACMYDisplay identifier provided by UniProt.
GO / PubMed6 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIGA_RS12285Primary locus identifier stored in the genes table.
Old locus tagIGA_01751Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB976136.1Sequence record reported by the local genomic context database.
Genomic interval203 889-204 584 nt696 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span202 742-204 584 ntGCF_000398965::NZ_KB976136.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000398965::NZ_KB976136.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB976136.1All displayed genes belong to this local TCS context.
Neighborhood span202 742-204 584 nt1 843 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
202 742 nt204 584 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IGA_RS12280GCF_000398965#IGA_RS12280
HKClassic
202 742-203 899 nt · Reverse (-)
IGA_RS12285GCF_000398965#IGA_RS12285
RROmpRCurrent focus
203 889-204 584 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161335#BCERE0026_RS11655Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1158201
Simplified PFAM architecture for RROC_1158201
PFAM domain coverage: 184 / 231 aa (79.7%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[155-228]
- Domain count: 2
- Matched identifier: RROC_1158201
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 155-228 ; Trans_reg_C 155-228
Cluster members and taxonomy
Representative gene: GCF_000161335#BCERE0026_RS11655
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 205 · GCF_000398965
AssemblyBaci_cere_HuA3-9_V1 · Scaffoldhaploid
Genome composition6 241 316 bp · 35,0% GCBacillus cereus HuA3-9
Signal transduction countsGenes 122 · HK 65 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key