1 HisKA#1
208-271 aa · 64 aa · 15.3% of protein
Raw token
HisKA:208:0.000000000000768:271:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IGA_RS09875
Histidine kinase, Classic
Bacillus cereus HuA3-9 · GCF_000398965
ClassHKTypeClassicLength418 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000398965#IGA_RS09875Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length418 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 418 aa (40.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa418 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
314-417 aa · 104 aa · 24.9% of protein
Raw token
HATPase_c:314:3.56e-22:417:107:109- Raw architecture: HisKA:208:0.000000000000768:271:64:64#HATPase_c:314:3.56e-22:417:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000398965::NZ_KB976129.1::G00020
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span7312-8568Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIGA_06022RefSeq proteinWP_016095135.1
Context group ID
GCF_000398965::NZ_KB976129.1::G00020Context members
IGA_RS09875
Partner locus tags
IGA_RS09875
Partner old locus tags
IGA_06022
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016095135.1Primary protein accession used for annex mappings.
UniProt accessionR8CGI8Primary UniProt accession resolved in the annex database.
UniProt IDR8CGI8_BACCEDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIGA_RS09875Primary locus identifier stored in the genes table.
Old locus tagIGA_06022Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB976129.1Sequence record reported by the local genomic context database.
Genomic interval7 312-8 568 nt1 257 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 312-8 568 ntGCF_000398965::NZ_KB976129.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000398965::NZ_KB976129.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB976129.1All displayed genes belong to this local TCS context.
Neighborhood span7 312-8 568 nt1 257 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 312 nt8 568 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
IGA_RS09875GCF_000398965#IGA_RS09875
HKClassicCurrent focus
7 312-8 568 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000398965#IGA_RS09875The current gene is the representative for this cluster.
PFAM architecture5TM-5TMR_LYT + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2285334
Simplified PFAM architecture for HKOC_2285334
PFAM domain coverage: 321 / 418 aa (76.8%)
1 aa418 aa
5TM-5TMR_LYTHisKAHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + HisKA + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[25-180] | HisKA[208-270] | HATPase_c[316-417]
- Domain count: 3
- Matched identifier: HKOC_2285334
- Positioned domains: 5TM-5TMR_LYT 25-180 ; HisKA 208-270 ; HATPase_c 316-417
Cluster members and taxonomy
Representative gene: GCF_000398965#IGA_RS09875
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 205 · GCF_000398965
AssemblyBaci_cere_HuA3-9_V1 · Scaffoldhaploid
Genome composition6 241 316 bp · 35,0% GCBacillus cereus HuA3-9
Signal transduction countsGenes 122 · HK 65 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key