1 Response_reg#1
3-123 aa · 121 aa · 49.8% of protein
Raw token
Response_reg:3:0.0000029:123:121:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
UME_RS12880
Response regulator LytTR family
Enterococcus faecalis EnGen0306 · GCF_000394955
ClassRRTypeLytTRLength243 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000394955#UME_RS12880Stable P2CS identifier used across views.
GenomeGCF_000394955Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length243 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage214 / 243 aa (88.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa243 aa
Domain-by-domain annotation2 items
2 LytTR#2
149-241 aa · 93 aa · 38.3% of protein
Raw token
LytTR:149:1.73e-21:241:98:98- Raw architecture: Response_reg:3:0.0000029:123:121:111#LytTR:149:1.73e-21:241:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000394955::NZ_KB947291.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span701161-701892Genomic interval covered by the local TCS group.
Identifiers
Old locus tagUME_01725RefSeq proteinWP_078126945.1
Context group ID
GCF_000394955::NZ_KB947291.1::G00011Context members
UME_RS12880
Partner locus tags
UME_RS12880
Partner old locus tags
UME_01725
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_078126945.1Primary protein accession used for annex mappings.
UniProt accessionA0A431H6X3Primary UniProt accession resolved in the annex database.
UniProt IDA0A431H6X3_ENTFLDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagUME_RS12880Primary locus identifier stored in the genes table.
Old locus tagUME_01725Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB947291.1Sequence record reported by the local genomic context database.
Genomic interval701 161-701 892 nt732 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span701 161-701 892 ntGCF_000394955::NZ_KB947291.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000394955::NZ_KB947291.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB947291.1All displayed genes belong to this local TCS context.
Neighborhood span701 161-701 892 nt732 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
701 161 nt701 892 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
UME_RS12880GCF_000394955#UME_RS12880
RRLytTRCurrent focus
701 161-701 892 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147215#HMPREF9504_RS03410Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0824775
Simplified PFAM architecture for RROC_0824775
PFAM domain coverage: 207 / 243 aa (85.2%)
1 aa243 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-121] | LytTR[151-240]
- Domain count: 2
- Matched identifier: RROC_0824775
- Positioned domains: Response_reg 5-121 ; Response_reg 5-121 ; LytTR 151-240 ; LytTR 151-240
Cluster members and taxonomy
Representative gene: GCF_000147215#HMPREF9504_RS03410
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 158 661 · GCF_000394955
AssemblyEnte_faec_CH136_V1 · Scaffoldhaploid
Genome composition3 222 352 bp · 37,0% GCEnterococcus faecalis EnGen0306
Signal transduction countsGenes 29 · HK 13 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key