1 HAMP#1
161-229 aa · 69 aa · 14.9% of protein
Raw token
HAMP:161:9.45e-16:229:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EBGED10_RS04845
Histidine kinase, Classic
Bacillus sp. GeD10 · GCF_000382845
ClassHKTypeClassicLength463 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000382845#EBGED10_RS04845Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length463 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 463 aa (52.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa463 aa
Domain-by-domain annotation3 items
2 HisKA#2
234-299 aa · 66 aa · 14.3% of protein
Raw token
HisKA:234:0.00000000000000883:299:66:643 HATPase_c#3
346-454 aa · 109 aa · 23.5% of protein
Raw token
HATPase_c:346:1.16e-36:454:109:109- Raw architecture: HAMP:161:9.45e-16:229:69:69#HisKA:234:0.00000000000000883:299:66:64#HATPase_c:346:1.16e-36:454:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000382845::NZ_CAVI010000060.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11164-13244Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEBGED10_9580RefSeq proteinWP_006918010.1
Context group ID
GCF_000382845::NZ_CAVI010000060.1::G00045Context members
EBGED10_RS04845EBGED10_RS04850
Partner locus tags
EBGED10_RS04845EBGED10_RS04850
Partner old locus tags
EBGED10_9580EBGED10_9590
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006918010.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X6FHJ5Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X6FHJ5_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEBGED10_RS04845Primary locus identifier stored in the genes table.
Old locus tagEBGED10_9580Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CAVI010000060.1Sequence record reported by the local genomic context database.
Genomic interval11 164-12 555 nt1 392 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span11 164-13 244 ntGCF_000382845::NZ_CAVI010000060.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000382845::NZ_CAVI010000060.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAVI010000060.1All displayed genes belong to this local TCS context.
Neighborhood span11 164-13 244 nt2 081 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 164 nt13 244 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EBGED10_RS04845GCF_000382845#EBGED10_RS04845
HKClassicCurrent focus
11 164-12 555 nt · Reverse (-)
EBGED10_RS04850GCF_000382845#EBGED10_RS04850
RROmpR
12 567-13 244 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000382845#EBGED10_RS04845The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1795846
Simplified PFAM architecture for HKOC_1795846
PFAM domain coverage: 227 / 463 aa (49.0%)
1 aa463 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[178-229] | HisKA[235-299] | HATPase_c[346-455]
- Domain count: 3
- Matched identifier: HKOC_1795846
- Positioned domains: HAMP 178-229 ; HisKA 235-299 ; HATPase_c 346-455
Cluster members and taxonomy
Representative gene: GCF_000382845#EBGED10_RS04845
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 301 086 · GCF_000382845
AssemblyASM38284v1 · Scaffoldhaploid
Genome composition5 865 695 bp · 35,0% GCBacillus sp. GeD10
Signal transduction countsGenes 96 · HK 53 · RR 43CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key