1 HisKA#1
286-348 aa · 63 aa · 12.7% of protein
Raw token
HisKA:286:0.0000000000000155:348:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EBGED10_RS04410
Histidine kinase, Classic
Bacillus sp. GeD10 · GCF_000382845
ClassHKTypeClassicLength498 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000382845#EBGED10_RS04410Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length498 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 498 aa (33.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa498 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
394-497 aa · 104 aa · 20.9% of protein
Raw token
HATPase_c:394:1.41e-28:497:107:109- Raw architecture: HisKA:286:0.0000000000000155:348:63:64#HATPase_c:394:1.41e-28:497:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000382845::NZ_CAVI010000051.1::G00048
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span53552-55048Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEBGED10_8740RefSeq proteinWP_006917747.1
Context group ID
GCF_000382845::NZ_CAVI010000051.1::G00048Context members
EBGED10_RS04410
Partner locus tags
EBGED10_RS04410
Partner old locus tags
EBGED10_8740
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_006917747.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEBGED10_RS04410Primary locus identifier stored in the genes table.
Old locus tagEBGED10_8740Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CAVI010000051.1Sequence record reported by the local genomic context database.
Genomic interval53 552-55 048 nt1 497 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span53 552-55 048 ntGCF_000382845::NZ_CAVI010000051.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000382845::NZ_CAVI010000051.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAVI010000051.1All displayed genes belong to this local TCS context.
Neighborhood span53 552-55 048 nt1 497 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
53 552 nt55 048 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EBGED10_RS04410GCF_000382845#EBGED10_RS04410
HKClassicCurrent focus
53 552-55 048 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000382845#EBGED10_RS04410The current gene is the representative for this cluster.
PFAM architecturedCache_1 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1487235
Simplified PFAM architecture for HKOC_1487235
PFAM domain coverage: 333 / 498 aa (66.9%)
1 aa498 aa
dCache_1HisKAHATPase_c
- Simplified architecture: dCache_1 + HisKA + HATPase_c
- Raw architecture: dCache_1[37-204] | HisKA[286-346] | HATPase_c[393-496]
- Domain count: 3
- Matched identifier: HKOC_1487235
- Positioned domains: dCache_1 37-204 ; HisKA 286-346 ; HATPase_c 393-496
Cluster members and taxonomy
Representative gene: GCF_000382845#EBGED10_RS04410
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 301 086 · GCF_000382845
AssemblyASM38284v1 · Scaffoldhaploid
Genome composition5 865 695 bp · 35,0% GCBacillus sp. GeD10
Signal transduction countsGenes 96 · HK 53 · RR 43CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key