1 CheW#1
20-156 aa · 137 aa · 45.1% of protein
Raw token
CheW:20:1.45e-28:156:138:138P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1097_RS00050
Response regulator CheV family
Enterocloster bolteae 90B8 · GCF_000371645
ClassRRTypeCheVLength304 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000371645#HMPREF1097_RS00050Stable P2CS identifier used across views.
GenomeGCF_000371645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Enterocloster
Domain signature
Compact overview inferred from the domain field
CheWResponse_reg
Protein length304 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage255 / 304 aa (83.9%)Merged over positioned domains only.
Domain description1 CheW,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa304 aa
Domain-by-domain annotation2 items
2 Response_reg#2
180-297 aa · 118 aa · 38.8% of protein
Raw token
Response_reg:180:2.22e-23:297:119:111- Raw architecture: CheW:20:1.45e-28:156:138:138#Response_reg:180:2.22e-23:297:119:111
- Domain description: 1 CheW,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000371645::NZ_KB851138.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span9050-9964Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1097_00008RefSeq proteinWP_002570057.1
Context group ID
GCF_000371645::NZ_KB851138.1::G00001Context members
HMPREF1097_RS00050
Partner locus tags
HMPREF1097_RS00050
Partner old locus tags
HMPREF1097_00008
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002570057.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7HBK3Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7HBK3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1097_RS00050Primary locus identifier stored in the genes table.
Old locus tagHMPREF1097_00008Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB851138.1Sequence record reported by the local genomic context database.
Genomic interval9 050-9 964 nt915 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span9 050-9 964 ntGCF_000371645::NZ_KB851138.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371645::NZ_KB851138.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB851138.1All displayed genes belong to this local TCS context.
Neighborhood span9 050-9 964 nt915 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 050 nt9 964 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF1097_RS00050GCF_000371645#HMPREF1097_RS00050
RRCheVCurrent focus
9 050-9 964 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371645#HMPREF1097_RS00050The current gene is the representative for this cluster.
PFAM architectureCheW + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0565081
Simplified PFAM architecture for RROC_0565081
PFAM domain coverage: 250 / 304 aa (82.2%)
1 aa304 aa
CheWResponse_reg
- Simplified architecture: CheW + Response_reg
- Raw architecture: CheW[20-154] | Response_reg[180-294]
- Domain count: 2
- Matched identifier: RROC_0565081
- Positioned domains: CheW 20-154 ; CheW 20-154 ; Response_reg 180-294 ; Response_reg 180-294
Cluster members and taxonomy
Representative gene: GCF_000371645#HMPREF1097_RS00050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 997 897 · GCF_000371645
AssemblyClos_bolt_90B8_V1 · Scaffoldhaploid
Genome composition6 482 686 bp · 48,5% GCEnterocloster bolteae 90B8
Signal transduction countsGenes 153 · HK 77 · RR 74CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEnterocloster
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Enterocloster
Related genes
Preview from the same derived genome key