1 HAMP#1
188-257 aa · 70 aa · 14.5% of protein
Raw token
HAMP:188:0.000000000047:257:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EC180050_RS03410
Histidine kinase, Classic
Escherichia coli 180050 · GCF_000356045
ClassHKTypeClassicLength482 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000356045#EC180050_RS03410Stable P2CS identifier used across views.
GenomeGCF_000356045Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length482 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 482 aa (51.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa482 aa
Domain-by-domain annotation3 items
2 HisKA#2
261-327 aa · 67 aa · 13.9% of protein
Raw token
HisKA:261:0.00000000000128:327:67:643 HATPase_c#3
371-482 aa · 112 aa · 23.2% of protein
Raw token
HATPase_c:371:1.65e-29:482:113:109- Raw architecture: HAMP:188:0.000000000047:257:71:69#HisKA:261:0.00000000000128:327:67:64#HATPase_c:371:1.65e-29:482:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000356045::NZ_AQEH01000048.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12973-15094Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEC180050_0571RefSeq proteinWP_001741326.1
Context group ID
GCF_000356045::NZ_AQEH01000048.1::G00004Context members
EC180050_RS03410EC180050_RS03415
Partner locus tags
EC180050_RS03410EC180050_RS03415
Partner old locus tags
EC180050_0571EC180050_0572
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_001741326.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEC180050_RS03410Primary locus identifier stored in the genes table.
Old locus tagEC180050_0571Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AQEH01000048.1Sequence record reported by the local genomic context database.
Genomic interval12 973-14 421 nt1 449 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span12 973-15 094 ntGCF_000356045::NZ_AQEH01000048.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000356045::NZ_AQEH01000048.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AQEH01000048.1All displayed genes belong to this local TCS context.
Neighborhood span12 973-15 094 nt2 122 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 973 nt15 094 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EC180050_RS03410GCF_000356045#EC180050_RS03410
HKClassicCurrent focus
12 973-14 421 nt · Reverse (-)
EC180050_RS03415GCF_000356045#EC180050_RS03415
RROmpR
14 411-15 094 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000356045#EC180050_RS03410The current gene is the representative for this cluster.
PFAM architectureCusS + HAMP + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1602763
Simplified PFAM architecture for HKOC_1602763
PFAM domain coverage: 397 / 482 aa (82.4%)
1 aa482 aa
CusSHAMPHisKAHATPase_c
- Simplified architecture: CusS + HAMP + HisKA + HATPase_c
- Raw architecture: CusS[8-180] | HAMP[210-257] | HisKA[262-326] | HATPase_c[371-481]
- Domain count: 4
- Matched identifier: HKOC_1602763
- Positioned domains: CusS 8-180 ; HAMP 210-257 ; HisKA 262-326 ; HATPase_c 371-481
Cluster members and taxonomy
Representative gene: GCF_000356045#EC180050_RS03410
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 116 103 · GCF_000356045
AssemblyASM35604v2 · Contighaploid
Genome composition4 808 558 bp · 50,5% GCEscherichia coli 180050
Signal transduction countsGenes 64 · HK 31 · RR 33CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key