1 Response_reg#1
5-114 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:5:9.88e-32:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OM9_RS05460
Response regulator OmpR family
Enterococcus faecium EnGen0057 · GCF_000322425
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000322425#OM9_RS05460Stable P2CS identifier used across views.
GenomeGCF_000322425Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 223 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-219 aa · 72 aa · 32.3% of protein
Raw token
Trans_reg_C:148:2.85e-31:219:77:77- Raw architecture: Response_reg:5:9.88e-32:114:111:111#Trans_reg_C:148:2.85e-31:219:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000322425::NZ_KB030110.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span424371-426405Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOM9_00414RefSeq proteinWP_002347239.1
Context group ID
GCF_000322425::NZ_KB030110.1::G00004Context members
OM9_RS05455OM9_RS05460
Partner locus tags
OM9_RS05455OM9_RS05460
Partner old locus tags
OM9_00413OM9_00414
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002347239.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOM9_RS05460Primary locus identifier stored in the genes table.
Old locus tagOM9_00414Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB030110.1Sequence record reported by the local genomic context database.
Genomic interval425 734-426 405 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span424 371-426 405 ntGCF_000322425::NZ_KB030110.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000322425::NZ_KB030110.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB030110.1All displayed genes belong to this local TCS context.
Neighborhood span424 371-426 405 nt2 035 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
424 371 nt426 405 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OM9_RS05455GCF_000322425#OM9_RS05455
HKClassic
424 371-425 744 nt · Reverse (-)
OM9_RS05460GCF_000322425#OM9_RS05460
RROmpRCurrent focus
425 734-426 405 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000322425#OM9_RS05460The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1588845
Simplified PFAM architecture for RROC_1588845
PFAM domain coverage: 180 / 223 aa (80.7%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-112] | Trans_reg_C[148-219]
- Domain count: 2
- Matched identifier: RROC_1588845
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; Trans_reg_C 148-219 ; Trans_reg_C 148-219
Cluster members and taxonomy
Representative gene: GCF_000322425#OM9_RS05460
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 138 934 · GCF_000322425
AssemblyEnte_faec_E4389_V1 · Scaffoldhaploid
Genome composition2 941 341 bp · 38,0% GCEnterococcus faecium EnGen0057
Signal transduction countsGenes 38 · HK 18 · RR 20CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key