1 Response_reg#1
5-119 aa · 115 aa · 46.0% of protein
Raw token
Response_reg:5:0.000000000362:119:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OIA_RS14450
Response regulator LytTR family
Enterococcus faecium EnGen0018 · GCF_000321825
ClassRRTypeLytTRLength250 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000321825#OIA_RS14450Stable P2CS identifier used across views.
GenomeGCF_000321825Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length250 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage192 / 250 aa (76.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa250 aa
Domain-by-domain annotation2 items
2 LytTR#2
152-228 aa · 77 aa · 30.8% of protein
Raw token
LytTR:152:0.0000000000000869:228:82:98- Raw architecture: Response_reg:5:0.000000000362:119:116:111#LytTR:152:0.0000000000000869:228:82:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000321825::NZ_KB029658.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span110526-111278Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOIA_04261RefSeq proteinWP_002294602.1
Context group ID
GCF_000321825::NZ_KB029658.1::G00013Context members
OIA_RS14450
Partner locus tags
OIA_RS14450
Partner old locus tags
OIA_04261
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002294602.1Primary protein accession used for annex mappings.
UniProt accessionA0A829F7H0Primary UniProt accession resolved in the annex database.
UniProt IDA0A829F7H0_ENTFCDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOIA_RS14450Primary locus identifier stored in the genes table.
Old locus tagOIA_04261Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB029658.1Sequence record reported by the local genomic context database.
Genomic interval110 526-111 278 nt753 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span110 526-111 278 ntGCF_000321825::NZ_KB029658.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000321825::NZ_KB029658.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB029658.1All displayed genes belong to this local TCS context.
Neighborhood span110 526-111 278 nt753 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
110 526 nt111 278 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
OIA_RS14450GCF_000321825#OIA_RS14450
RRLytTRCurrent focus
110 526-111 278 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000172655#EFME1071_RS09130Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0722019
Simplified PFAM architecture for RROC_0722019
PFAM domain coverage: 209 / 250 aa (83.6%)
1 aa250 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-122] | LytTR[153-243]
- Domain count: 2
- Matched identifier: RROC_0722019
- Positioned domains: Response_reg 5-122 ; Response_reg 5-122 ; LytTR 153-243 ; LytTR 153-243
Cluster members and taxonomy
Representative gene: GCF_000172655#EFME1071_RS09130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 138 899 · GCF_000321825
AssemblyEnte_faec_E1576_V1 · Scaffoldhaploid
Genome composition2 713 803 bp · 38,0% GCEnterococcus faecium EnGen0018
Signal transduction countsGenes 35 · HK 16 · RR 19CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key