1 Response_reg#1
4-119 aa · 116 aa · 22.3% of protein
Raw token
Response_reg:4:6.24e-28:119:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OIA_RS12995
Response regulator, unclassified
Enterococcus faecium EnGen0018 · GCF_000321825
ClassRRTypeunclassifiedLength521 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000321825#OIA_RS12995Stable P2CS identifier used across views.
GenomeGCF_000321825Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length521 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage197 / 521 aa (37.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa521 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
420-462 aa · 43 aa · 8.3% of protein
Raw token
HTH_AraC:420:0.00000213:462:43:423 HTH_AraC#3
475-512 aa · 38 aa · 7.3% of protein
Raw token
HTH_AraC:475:0.0000000105:512:38:42- Raw architecture: Response_reg:4:6.24e-28:119:117:111#HTH_AraC:420:0.00000213:462:43:42#HTH_AraC:475:0.0000000105:512:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000321825::NZ_KB029650.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span241079-242644Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOIA_03978RefSeq proteinWP_002288004.1
Context group ID
GCF_000321825::NZ_KB029650.1::G00011Context members
OIA_RS12995
Partner locus tags
OIA_RS12995
Partner old locus tags
OIA_03978
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002288004.1Primary protein accession used for annex mappings.
UniProt accessionQ3XZY4Primary UniProt accession resolved in the annex database.
UniProt IDQ3XZY4_ENTFDDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOIA_RS12995Primary locus identifier stored in the genes table.
Old locus tagOIA_03978Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB029650.1Sequence record reported by the local genomic context database.
Genomic interval241 079-242 644 nt1 566 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span241 079-242 644 ntGCF_000321825::NZ_KB029650.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000321825::NZ_KB029650.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB029650.1All displayed genes belong to this local TCS context.
Neighborhood span241 079-242 644 nt1 566 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
241 079 nt242 644 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
OIA_RS12995GCF_000321825#OIA_RS12995
RRunclassifiedCurrent focus
241 079-242 644 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147235#HMPREF9525_RS06440Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0124408
Simplified PFAM architecture for RROC_0124408
PFAM domain coverage: 194 / 521 aa (37.2%)
1 aa521 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-119] | HTH_18[435-512]
- Domain count: 2
- Matched identifier: RROC_0124408
- Positioned domains: Response_reg 4-119 ; Response_reg 4-119 ; HTH_18 435-512 ; HTH_18 435-512
Cluster members and taxonomy
Representative gene: GCF_000147235#HMPREF9525_RS06440
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 138 899 · GCF_000321825
AssemblyEnte_faec_E1576_V1 · Scaffoldhaploid
Genome composition2 713 803 bp · 38,0% GCEnterococcus faecium EnGen0018
Signal transduction countsGenes 35 · HK 16 · RR 19CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key