1 HAMP#1
171-241 aa · 71 aa · 15.3% of protein
Raw token
HAMP:171:0.000000028:241:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OI5_RS18125
Histidine kinase, Classic
Enterococcus faecium EnGen0009 · GCF_000321765
ClassHKTypeClassicLength464 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000321765#OI5_RS18125Stable P2CS identifier used across views.
GenomeGCF_000321765Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length464 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 464 aa (53.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa464 aa
Domain-by-domain annotation3 items
2 HisKA#2
246-308 aa · 63 aa · 13.6% of protein
Raw token
HisKA:246:0.00000000000794:308:63:643 HATPase_c#3
353-464 aa · 112 aa · 24.1% of protein
Raw token
HATPase_c:353:1.1e-32:464:112:109- Raw architecture: HAMP:171:0.000000028:241:71:69#HisKA:246:0.00000000000794:308:63:64#HATPase_c:353:1.1e-32:464:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000321765::NZ_KB029599.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span70121-72195Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOI5_05197RefSeq proteinWP_002333358.1
Context group ID
GCF_000321765::NZ_KB029599.1::G00019Context members
OI5_RS18125OI5_RS18130
Partner locus tags
OI5_RS18125OI5_RS18130
Partner old locus tags
OI5_05197OI5_05198
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002333358.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOI5_RS18125Primary locus identifier stored in the genes table.
Old locus tagOI5_05197Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB029599.1Sequence record reported by the local genomic context database.
Genomic interval70 121-71 515 nt1 395 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span70 121-72 195 ntGCF_000321765::NZ_KB029599.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000321765::NZ_KB029599.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB029599.1All displayed genes belong to this local TCS context.
Neighborhood span70 121-72 195 nt2 075 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
70 121 nt72 195 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OI5_RS18125GCF_000321765#OI5_RS18125
HKClassicCurrent focus
70 121-71 515 nt · Reverse (-)
OI5_RS18130GCF_000321765#OI5_RS18130
RROmpR
71 515-72 195 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000321765#OI5_RS18125The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1784007
Simplified PFAM architecture for HKOC_1784007
PFAM domain coverage: 173 / 464 aa (37.3%)
1 aa464 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[246-308] | HATPase_c[354-463]
- Domain count: 2
- Matched identifier: HKOC_1784007
- Positioned domains: HisKA 246-308 ; HATPase_c 354-463
Cluster members and taxonomy
Representative gene: GCF_000321765#OI5_RS18125
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 138 896 · GCF_000321765
AssemblyEnte_faec_E1573_V1 · Scaffoldhaploid
Genome composition2 864 230 bp · 38,0% GCEnterococcus faecium EnGen0009
Signal transduction countsGenes 38 · HK 18 · RR 20CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key