1 HAMP#1
198-268 aa · 71 aa · 14.2% of protein
Raw token
HAMP:198:0.00000000000388:268:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OI5_RS17740
Histidine kinase, Classic
Enterococcus faecium EnGen0009 · GCF_000321765
ClassHKTypeClassicLength501 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000321765#OI5_RS17740Stable P2CS identifier used across views.
GenomeGCF_000321765Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length501 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 501 aa (49.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa501 aa
Domain-by-domain annotation3 items
2 HisKA#2
273-339 aa · 67 aa · 13.4% of protein
Raw token
HisKA:273:0.00000000000000281:339:67:643 HATPase_c#3
387-497 aa · 111 aa · 22.2% of protein
Raw token
HATPase_c:387:8.26e-28:497:111:109- Raw architecture: HAMP:198:0.00000000000388:268:71:69#HisKA:273:0.00000000000000281:339:67:64#HATPase_c:387:8.26e-28:497:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000321765::NZ_KB029598.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span289116-291304Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOI5_05119RefSeq proteinWP_002333326.1
Context group ID
GCF_000321765::NZ_KB029598.1::G00018Context members
OI5_RS17735OI5_RS17740
Partner locus tags
OI5_RS17735OI5_RS17740
Partner old locus tags
OI5_05118OI5_05119
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002333326.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOI5_RS17740Primary locus identifier stored in the genes table.
Old locus tagOI5_05119Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB029598.1Sequence record reported by the local genomic context database.
Genomic interval289 799-291 304 nt1 506 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span289 116-291 304 ntGCF_000321765::NZ_KB029598.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000321765::NZ_KB029598.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB029598.1All displayed genes belong to this local TCS context.
Neighborhood span289 116-291 304 nt2 189 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
289 116 nt291 304 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OI5_RS17735GCF_000321765#OI5_RS17735
RROmpR
289 116-289 802 nt · Forward (+)
OI5_RS17740GCF_000321765#OI5_RS17740
HKClassicCurrent focus
289 799-291 304 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000262105#Y7G_RS0108550Use this link to inspect the representative gene detail.
PFAM architectureArlS_N + HAMP + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1468313
Simplified PFAM architecture for HKOC_1468313
PFAM domain coverage: 377 / 501 aa (75.2%)
1 aa501 aa
ArlS_NHAMPHisKAHATPase_c
- Simplified architecture: ArlS_N + HAMP + HisKA + HATPase_c
- Raw architecture: ArlS_N[46-193] | HAMP[215-268] | HisKA[274-339] | HATPase_c[388-496]
- Domain count: 4
- Matched identifier: HKOC_1468313
- Positioned domains: ArlS_N 46-193 ; HAMP 215-268 ; HisKA 274-339 ; HATPase_c 388-496
Cluster members and taxonomy
Representative gene: GCF_000262105#Y7G_RS0108550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 138 896 · GCF_000321765
AssemblyEnte_faec_E1573_V1 · Scaffoldhaploid
Genome composition2 864 230 bp · 38,0% GCEnterococcus faecium EnGen0009
Signal transduction countsGenes 38 · HK 18 · RR 20CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key